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6-磷酸葡萄糖胺激活glmS核酶的结构基础

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate.

作者信息

Klein Daniel J, Ferré-D'Amaré Adrian R

机构信息

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109-1024, USA.

出版信息

Science. 2006 Sep 22;313(5794):1752-6. doi: 10.1126/science.1129666.

Abstract

The glmS ribozyme is the only natural catalytic RNA known to require a small-molecule activator for catalysis. This catalytic RNA functions as a riboswitch, with activator-dependent RNA cleavage regulating glmS messenger RNA expression. We report crystal structures of the glmS ribozyme in precleavage states that are unliganded or bound to the competitive inhibitor glucose-6-phosphate and in the postcleavage state. All structures superimpose closely, revealing a remarkably rigid RNA that contains a preformed active and coenzyme-binding site. Unlike other riboswitches, the glmS ribozyme binds its activator in an open, solvent-accessible pocket. Our structures suggest that the amine group of the glmS ribozyme-bound coenzyme performs general acid-base and electrostatic catalysis.

摘要

glmS核酶是已知唯一一种需要小分子激活剂来进行催化的天然催化性RNA。这种催化性RNA作为一种核糖开关发挥作用,其激活剂依赖性的RNA切割调节着glmS信使RNA的表达。我们报道了处于未结合配体或结合竞争性抑制剂6-磷酸葡萄糖的切割前状态以及切割后状态的glmS核酶的晶体结构。所有结构紧密重叠,揭示出一种非常刚性的RNA,它含有一个预先形成的活性位点和辅酶结合位点。与其他核糖开关不同,glmS核酶在一个开放的、溶剂可及的口袋中结合其激活剂。我们的结构表明,与glmS核酶结合的辅酶的胺基进行一般酸碱催化和静电催化。

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