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布朗运动马达小集合体中的力产生

Force generation in small ensembles of Brownian motors.

作者信息

Lindén Martin, Tuohimaa Tomi, Jonsson Ann-Beth, Wallin Mats

机构信息

Theoretical Physics, Royal Institute of Technology, AlbaNova, 10691 Stockholm, Sweden.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Aug;74(2 Pt 1):021908. doi: 10.1103/PhysRevE.74.021908. Epub 2006 Aug 8.

Abstract

The motility of certain gram-negative bacteria is mediated by retraction of type IV pili surface filaments, which are essential for infectivity. The retraction is powered by a strong molecular motor protein, PilT, producing very high forces that can exceed 150 pN. The molecular details of the motor mechanism are still largely unknown, while other features have been identified, such as the ring-shaped protein structure of the PilT motor. The surprisingly high forces generated by the PilT system motivate a model investigation of the generation of large forces in molecular motors. We propose a simple model, involving a small ensemble of motor subunits interacting through the deformations on a circular backbone with finite stiffness. The model describes the motor subunits in terms of diffusing particles in an asymmetric, time-dependent binding potential (flashing ratchet potential), roughly corresponding to the ATP hydrolysis cycle. We compute force-velocity relations in a subset of the parameter space and explore how the maximum force (stall force) is determined by stiffness, binding strength, ensemble size, and degree of asymmetry. We identify two qualitatively different regimes of operation depending on the relation between ensemble size and asymmetry. In the transition between these two regimes, the stall force depends nonlinearly on the number of motor subunits. Compared to its constituents without interactions, we find higher efficiency and qualitatively different force-velocity relations. The model captures several of the qualitative features obtained in experiments on pilus retraction forces, such as roughly constant velocity at low applied forces and insensitivity in the stall force to changes in the ATP concentration.

摘要

某些革兰氏阴性菌的运动性是由IV型菌毛表面细丝的收缩介导的,这些细丝对于感染性至关重要。收缩由一种强大的分子运动蛋白PilT驱动,产生的力非常高,可超过150皮牛。运动机制的分子细节在很大程度上仍然未知,不过已经确定了其他一些特征,比如PilT运动蛋白的环形蛋白质结构。PilT系统产生的惊人高力促使人们对分子马达中大力的产生进行模型研究。我们提出了一个简单模型,该模型涉及一小群运动亚基,它们通过具有有限刚度的圆形骨架上的变形相互作用。该模型将运动亚基描述为处于不对称、随时间变化的结合势(闪烁棘轮势)中的扩散粒子,大致对应于ATP水解循环。我们在参数空间的一个子集中计算力 - 速度关系,并探索最大力(失速力)是如何由刚度、结合强度、亚基数量和不对称程度决定的。根据亚基数量和不对称程度之间的关系,我们确定了两种性质不同的运行模式。在这两种模式的转变过程中,失速力非线性地依赖于运动亚基的数量。与没有相互作用的组成部分相比,我们发现效率更高且力 - 速度关系性质不同。该模型捕捉到了菌毛收缩力实验中获得的几个定性特征,比如在低外力作用下速度大致恒定,以及失速力对ATP浓度变化不敏感。

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