Cherezov V, Yamashita E, Liu W, Zhalnina M, Cramer W A, Caffrey M
Department of Chemistry, The Ohio State University, Columbus, OH 43210, USA.
J Mol Biol. 2006 Dec 8;364(4):716-34. doi: 10.1016/j.jmb.2006.09.022. Epub 2006 Sep 12.
Crystals of the apo form of the vitamin B12 and colicin receptor, BtuB, that diffract to 1.95 A have been grown by the membrane-based in meso technique. The structure of the protein differs in several details from that of its counterpart grown by the more traditional, detergent-based (in surfo) method. Some of these differences include (i) the five N-terminal residues are resolved in meso, (ii) residues 57-62 in the hatch domain and residues 574-581 in loop 21-22 are disordered in meso and are ordered in surfo, (iii) residues 278-287 in loop 7-8 are resolved in meso, (iv) residues 324-331 in loop 9-10, 396-411 in loop 13-14, 442-458 in loop 15-16 and 526-541 in loop 19-20 have large differences in position between the two crystal forms, as have residues 86-96 in the hatch domain, and (v) the conformation of residues 6 and 7 in the Ton box (considered critical to signal transduction and substrate transport) are entirely different in the two structures. Importantly, the in meso orientation of residues 6 and 7 is similar to that of the vitamin B12-charged state. These data suggest that the "substrate-induced" 180 degrees -rotation of residues 6 and 7 reported in the literature may not be a unique signalling event. The extent to which these findings agree with structural, dynamic and functional insights gleaned from site-directed spin labelling and electron paramagnetic resonance measurements is evaluated. Packing in in meso grown crystals is dense and layered, consistent with the current model for crystallogenesis of membrane proteins in lipidic mesophases. Layered packing has been used to locate the transmembrane hydrophobic surface of the protein. Generally, this is consistent with tryptophan, tyrosine, lipid and CalphaB-factor distributions in the protein, and with predictions based on transfer free energy calculations.
通过基于膜的中膜技术培养出了维生素B12和大肠杆菌素受体BtuB的脱辅基形式的晶体,其衍射分辨率达到1.95埃。该蛋白质的结构在几个细节上与其通过更传统的基于去污剂(在表面活性剂中)的方法培养的对应物不同。其中一些差异包括:(i)在中膜中解析出了五个N端残基;(ii)孵化结构域中的残基57 - 62以及环21 - 22中的残基574 - 581在中膜中无序,而在表面活性剂中有序;(iii)环7 - 8中的残基278 - 287在中膜中解析出来;(iv)环9 - 10中的残基324 - 331、环13 - 14中的残基396 - 411、环15 - 16中的残基442 - 458以及环19 - 20中的残基526 - 541在两种晶体形式之间的位置有很大差异,孵化结构域中的残基86 - 96也是如此;(v)在两种结构中,Ton框中残基6和7的构象(被认为对信号转导和底物运输至关重要)完全不同。重要的是,残基6和7在中膜中的取向与维生素B12结合状态的取向相似。这些数据表明,文献中报道的残基6和7的“底物诱导”180度旋转可能不是一个独特的信号事件。评估了这些发现与从定点自旋标记和电子顺磁共振测量中获得的结构、动力学和功能见解的一致程度。中膜生长晶体中的堆积是密集且分层的,这与目前脂质中间相中膜蛋白结晶形成的模型一致。分层堆积已被用于定位蛋白质的跨膜疏水表面。一般来说,这与蛋白质中色氨酸、酪氨酸、脂质和CαB因子的分布以及基于转移自由能计算的预测一致。