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噬菌体P2的gpQ门户蛋白在晶体中形成十二聚体连接体。

The gpQ portal protein of bacteriophage P2 forms dodecameric connectors in crystals.

作者信息

Doan Danny N P, Dokland Terje

机构信息

Institute of Molecular and Cell Biology, Singapore.

出版信息

J Struct Biol. 2007 Feb;157(2):432-6. doi: 10.1016/j.jsb.2006.08.009. Epub 2006 Sep 1.

Abstract

Double-stranded bacteriophages code for a protein called a connector or portal protein that serves as the entry and exit portal for DNA during genome packaging and ejection, as well as the connection point between heads and tails, and possibly as a nucleator for capsid assembly. The gpQ connector protein from bacteriophage P2 has been overexpressed in Escherichia coli and purified by sucrose gradient centrifugation. Negative stain electron microscopy and image analysis revealed a 135 A diameter dodecameric ring structure with a central 25 A hole. The connector showed a strong propensity to aggregate at low ionic strength and would form microcrystalline structures in solution. Consequently, the connectors were crystallized by hanging-drop vapor diffusion against low ionic strength buffer. Two crystal forms were observed: a P4(1)22 form with unit cell parameters a=b=96.33 A and c=454.42 A that diffracted X-rays to 4.5 A resolution and an I222 crystal form with a=168.86 A, b=171.88 A and c=168.68 A that diffracted to 4.1A resolution. Self-rotation functions confirmed the presence of 12-fold symmetry in the crystals.

摘要

双链噬菌体编码一种名为连接蛋白或门户蛋白的蛋白质,该蛋白在基因组包装和释放过程中作为DNA的进出门户,也是头部和尾部之间的连接点,还可能作为衣壳组装的成核剂。来自噬菌体P2的gpQ连接蛋白已在大肠杆菌中过表达,并通过蔗糖梯度离心法纯化。负染电子显微镜和图像分析显示,其为直径135埃的十二聚体环结构,中心有一个25埃的孔。该连接蛋白在低离子强度下有很强的聚集倾向,在溶液中会形成微晶结构。因此,通过悬滴气相扩散法,以低离子强度缓冲液为结晶母液,使连接蛋白结晶。观察到两种晶体形式:一种是P4(1)22晶型,晶胞参数a = b = 96.33埃,c = 454.42埃,X射线衍射分辨率为4.5埃;另一种是I222晶型,a = 168.86埃,b = 171.88埃,c = 168.68埃,衍射分辨率为4.1埃。自旋转函数证实晶体中存在12次对称性。

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