Lu Ting, Shen Tongye, Zong Chenghang, Hasty Jeff, Wolynes Peter G
Department of Physics, Center for Theoretical Biological Physics, University of California at San Diego, La Jolla, CA 92093, USA.
Proc Natl Acad Sci U S A. 2006 Nov 7;103(45):16752-7. doi: 10.1073/pnas.0607698103. Epub 2006 Oct 27.
Cellular signal transduction often involves a reaction network of phosphorylation and transport events arranged with a ladder topology. If we keep track of the location of the phosphate groups describing an abstract state space, a simple model of signal transduction involving enzymes can be mapped on to a problem of how multiple biased random walkers compete to reach their target in the nucleus yielding a signal. Here, the first passage time probability and the survival probability for multiple walkers can be used to characterize the response of the network. The statistics of the first passage through the network has an asymmetric distribution with a long tail arising from the hierarchical structure of the network. This distribution implies a significant difference between the mean and the most probable signal transduction time. The response patterns for various external inputs generated by our model agree with recent experiments. In addition, the model predicts that there is an optimal phosphorylation enzyme concentration for rapid signal transduction.
细胞信号转导通常涉及一个具有阶梯拓扑结构的磷酸化和转运事件反应网络。如果我们追踪描述抽象状态空间的磷酸基团的位置,一个涉及酶的简单信号转导模型可以映射到一个问题上,即多个有偏随机游走者如何竞争以在细胞核中到达其目标从而产生信号。在这里,多个游走者的首次通过时间概率和存活概率可用于表征网络的响应。通过网络的首次通过统计具有不对称分布,其长尾源于网络的层次结构。这种分布意味着平均信号转导时间和最可能的信号转导时间之间存在显著差异。我们模型产生的各种外部输入的响应模式与最近的实验一致。此外,该模型预测存在一个用于快速信号转导的最佳磷酸化酶浓度。