Archak Sunil, Meduri Eshwar, Kumar P Sravana, Nagaraju J
Laboratory of Molecular Genetics, Centre for DNA Fingerprinting and Diagnostics, ECIL Road, Nacharam, Hyderabad 500 076, India.
Nucleic Acids Res. 2007 Jan;35(Database issue):D36-9. doi: 10.1093/nar/gkl778. Epub 2006 Nov 1.
InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base pairs and repeat units); genomic location (exon, intron, up-stream or transposon); nature (perfect or imperfect); and sequence composition (repeat motif and GC%). One can access microsatellite cluster (compound repeats) information and a list of microsatellites with conserved flanking sequences (microsatellite family or paralogs). InSatDb is complete with the insects information, web links to find details, methodology and a tutorial. A separate 'Analysis' section illustrates the comparative genomic analysis that can be carried out using the output. InSatDb is available at www.cdfd.org.in/insatdb.
InSatDb提供了一个交互式界面，用于查询有关五种全序列昆虫基因组（果蝇、蜜蜂、疟蚊、赤拟谷盗和家蚕）本身微卫星特征的信息。InSatDb允许用户获取注释有大小（以碱基对和重复单元表示）、基因组位置（外显子、内含子、上游或转座子）、性质（完美或不完美）以及序列组成（重复基序和GC%）的微卫星。用户可以访问微卫星簇（复合重复）信息以及具有保守侧翼序列的微卫星列表（微卫星家族或旁系同源物）。InSatDb包含昆虫信息、查找详细信息的网页链接、方法和教程。单独的“分析”部分展示了可使用输出进行的比较基因组分析。可通过www.cdfd.org.in/insatdb访问InSatDb。
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