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与养蚕业相关的网络资源全景。

A comprehensive view of the web-resources related to sericulture.

作者信息

Singh Deepika, Chetia Hasnahana, Kabiraj Debajyoti, Sharma Swagata, Kumar Anil, Sharma Pragya, Deka Manab, Bora Utpal

机构信息

Bioengineering Research Laboratory, Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, Assam 781039, India.

Centre for Biological Sciences (Bioinformatics), Central University of South Bihar (CUSB), Patna 800014, India.

出版信息

Database (Oxford). 2016 Jun 15;2016. doi: 10.1093/database/baw086. Print 2016.

DOI:10.1093/database/baw086
PMID:27307138
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4909305/
Abstract

Recent progress in the field of sequencing and analysis has led to a tremendous spike in data and the development of data science tools. One of the outcomes of this scientific progress is development of numerous databases which are gaining popularity in all disciplines of biology including sericulture. As economically important organism, silkworms are studied extensively for their numerous applications in the field of textiles, biomaterials, biomimetics, etc. Similarly, host plants, pests, pathogens, etc. are also being probed to understand the seri-resources more efficiently. These studies have led to the generation of numerous seri-related databases which are extremely helpful for the scientific community. In this article, we have reviewed all the available online resources on silkworm and its related organisms, including databases as well as informative websites. We have studied their basic features and impact on research through citation count analysis, finally discussing the role of emerging sequencing and analysis technologies in the field of seri-data science. As an outcome of this review, a web portal named SeriPort, has been created which will act as an index for the various sericulture-related databases and web resources available in cyberspace.Database URL: http://www.seriport.in/.

摘要

测序与分析领域的最新进展导致数据量急剧增加以及数据科学工具的发展。这一科学进展的成果之一是众多数据库的开发，这些数据库在包括蚕桑学在内的所有生物学学科中都越来越受欢迎。作为具有经济重要性的生物，家蚕因其在纺织、生物材料、仿生学等领域的众多应用而被广泛研究。同样，寄主植物、害虫、病原体等也在被深入探究，以便更有效地了解蚕桑资源。这些研究催生了众多与蚕桑相关的数据库，对科学界极为有用。在本文中，我们回顾了所有关于家蚕及其相关生物的在线资源，包括数据库以及信息丰富的网站。我们通过引用计数分析研究了它们的基本特征及其对研究的影响，最后讨论了新兴测序与分析技术在蚕桑数据科学领域中的作用。作为此次综述的成果，创建了一个名为SeriPort的门户网站，它将作为网络空间中各种与蚕桑养殖相关的数据库和网络资源的索引。数据库网址：http://www.seriport.in/

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cbb3/4909305/ab814e42cb40/baw086f4p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cbb3/4909305/cf58054b4015/baw086f1p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cbb3/4909305/49a76e57a75d/baw086f2p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cbb3/4909305/ef3610a5deb4/baw086f3p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cbb3/4909305/ab814e42cb40/baw086f4p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cbb3/4909305/cf58054b4015/baw086f1p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cbb3/4909305/49a76e57a75d/baw086f2p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cbb3/4909305/ef3610a5deb4/baw086f3p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cbb3/4909305/ab814e42cb40/baw086f4p.jpg

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Curcumin Resource Database.姜黄素资源数据库。
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Advanced technologies for genetically manipulating the silkworm Bombyx mori, a model Lepidopteran insect.用于对模式鳞翅目昆虫家蚕进行基因操作的先进技术。
Proc Biol Sci. 2015 Jul 7;282(1810). doi: 10.1098/rspb.2015.0487.
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Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.解码橡树基因组：序列数据的公开发布、组装、注释及发表策略
Mol Ecol Resour. 2016 Jan;16(1):254-65. doi: 10.1111/1755-0998.12425. Epub 2015 May 29.
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Comparative analysis of the silk gland transcriptomes between the domestic and wild silkworms.家蚕与野蚕丝腺转录组的比较分析。
BMC Genomics. 2015 Feb 6;16(1):60. doi: 10.1186/s12864-015-1287-9.
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Comparative transcriptome analyses on silk glands of six silkmoths imply the genetic basis of silk structure and coloration.对六种蚕蛾丝腺的比较转录组分析揭示了丝结构和颜色的遗传基础。
BMC Genomics. 2015 Mar 17;16(1):203. doi: 10.1186/s12864-015-1420-9.
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Studies of host-pathogen interactions and immune-related drug development using the silkworm: interdisciplinary immunology, microbiology, and pharmacology studies.利用家蚕进行宿主-病原体相互作用及免疫相关药物开发的研究：跨学科免疫学、微生物学和药理学研究。
Drug Discov Ther. 2015 Aug;9(4):238-46. doi: 10.5582/ddt.2015.01015. Epub 2015 Apr 10.
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The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release.栎树基因表达图谱：对壳斗科基因组进化的见解以及芽休眠解除过程中调控基因的发现。
BMC Genomics. 2015 Feb 21;16(1):112. doi: 10.1186/s12864-015-1331-9.
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Next-generation technologies for multiomics approaches including interactome sequencing.用于多组学方法的下一代技术，包括相互作用组测序。
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