Nukui Masatoshi, Mello Luciane V, Littlejohn James E, Setlow Barbara, Setlow Peter, Kim Kijeong, Leighton Terrance, Jedrzejas Mark J
Children's Hospital Oakland Research Institute, Oakland, California 94609, USA, and Northwest Institute for Bio-Health Informatics/University of Liverpool, UK.
Biophys J. 2007 Feb 1;92(3):977-88. doi: 10.1529/biophysj.106.093872. Epub 2006 Nov 3.
Phosphoglycerate mutases (PGMs) catalyze the isomerization of 2- and 3-phosphoglycerates and are essential for glucose metabolism in most organisms. This study reports the production, structure, and molecular dynamics analysis of Bacillus anthracis cofactor-independent PGM (iPGM). The three-dimensional structure of B. anthracis PGM is composed of two structural and functional domains, the phosphatase and transferase. The structural relationship between these two domains is different than in the B. stearothermophilus iPGM structure determined previously. However, the structures of the two domains of B. anthracis iPGM show a high degree of similarity to those in B. stearothermophilus iPGM. The novel domain arrangement in B. anthracis iPGM and the dynamic property of these domains is directly linked to the mechanism of enzyme catalysis, in which substrate binding is proposed to result in close association of the two domains. The structure of B. anthracis iPGM and the molecular dynamics of this structure provide unique insight into the mechanism of iPGM catalysis, in particular the roles of changes in coordination geometry of the enzyme's two bivalent metal ions and the regulation of this enzyme's activity by changes in intracellular pH during spore formation and germination in Bacillus species.
磷酸甘油酸变位酶(PGMs)催化2-磷酸甘油酸和3-磷酸甘油酸的异构化反应,对大多数生物体的葡萄糖代谢至关重要。本研究报道了炭疽芽孢杆菌非依赖辅因子的PGM(iPGM)的生产、结构及分子动力学分析。炭疽芽孢杆菌PGM的三维结构由两个结构和功能域组成,即磷酸酶结构域和转移酶结构域。这两个结构域之间的结构关系与之前测定的嗜热脂肪芽孢杆菌iPGM结构不同。然而,炭疽芽孢杆菌iPGM的两个结构域的结构与嗜热脂肪芽孢杆菌iPGM的结构高度相似。炭疽芽孢杆菌iPGM中新颖的结构域排列及其动态特性与酶催化机制直接相关,在该机制中,底物结合被认为会导致两个结构域紧密结合。炭疽芽孢杆菌iPGM的结构及其分子动力学为iPGM催化机制提供了独特的见解,特别是该酶的两个二价金属离子配位几何结构变化的作用,以及芽孢杆菌属在孢子形成和萌发过程中细胞内pH值变化对该酶活性的调节作用。