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人双磷酸甘油酸变位酶的无配体结构揭示了配体结合诱导的侧链运动。

Unliganded structure of human bisphosphoglycerate mutase reveals side-chain movements induced by ligand binding.

作者信息

Patterson A, Price N C, Nairn J

机构信息

Division of Molecular and Cellular Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, Scotland.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Nov 1;66(Pt 11):1415-20. doi: 10.1107/S1744309110035475. Epub 2010 Oct 27.

Abstract

Erythrocyte-specific bisphosphoglycerate mutase is a trifunctional enzyme which modulates the levels of 2,3-bisphosphoglycerate (2,3-BPG) in red blood cells by virtue of its synthase and phosphatase activities. Low levels of erythrocyte 2,3-BPG increase the affinity of haemoglobin for oxygen, thus limiting the release of oxygen into tissues. 2,3-BPG levels in stored blood decline rapidly owing to the phosphatase activity of bisphosphoglycerate mutase, which is enhanced by a fall in pH. Here, the 1.94 Å resolution X-ray structure of bisphosphoglycerate mutase is presented, focusing on the dynamic nature of key ligand-binding residues and their interaction with the inhibitor citrate. Residues at the binding pocket are complete. In addition, the movement of key residues in the presence and absence of ligand is described and alternative conformations are explored. The conformation in which the ligand citrate would bind at the substrate-binding pocket is proposed, with discussion and representations of its orientation. The characterization of bisphosphoglycerate mutase-citrate interactions will provide a framework for the design of specific inhibitors of the phosphatase activity of this enzyme, which may limit the decline of 2,3-BPG in stored blood.

摘要

红细胞特异性二磷酸甘油酸变位酶是一种三功能酶,凭借其合酶和磷酸酶活性调节红细胞中2,3-二磷酸甘油酸(2,3-BPG)的水平。红细胞2,3-BPG水平降低会增加血红蛋白对氧气的亲和力,从而限制氧气向组织中的释放。由于二磷酸甘油酸变位酶的磷酸酶活性,储存血液中的2,3-BPG水平会迅速下降,而pH值下降会增强这种活性。本文展示了二磷酸甘油酸变位酶分辨率为1.94 Å的X射线结构,重点关注关键配体结合残基的动态性质及其与抑制剂柠檬酸盐的相互作用。结合口袋处的残基完整无缺。此外,还描述了配体存在和不存在时关键残基的移动情况,并探索了替代构象。提出了配体柠檬酸盐在底物结合口袋处结合的构象,并对其取向进行了讨论和展示。二磷酸甘油酸变位酶与柠檬酸盐相互作用的表征将为设计该酶磷酸酶活性的特异性抑制剂提供框架,这可能会限制储存血液中2,3-BPG的下降。

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