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发现具有皮摩尔亲和力的HIV-1蛋白酶抑制剂,其包含N-芳基-恶唑烷酮-5-甲酰胺作为新型P2配体。

Discovery of HIV-1 protease inhibitors with picomolar affinities incorporating N-aryl-oxazolidinone-5-carboxamides as novel P2 ligands.

作者信息

Ali Akbar, Reddy G S Kiran Kumar, Cao Hong, Anjum Saima Ghafoor, Nalam Madhavi N L, Schiffer Celia A, Rana Tariq M

机构信息

Chemical Biology Program, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.

出版信息

J Med Chem. 2006 Dec 14;49(25):7342-56. doi: 10.1021/jm060666p.

Abstract

Here, we describe the design, synthesis, and biological evaluation of novel HIV-1 protease inhibitors incorporating N-phenyloxazolidinone-5-carboxamides into the (hydroxyethylamino)sulfonamide scaffold as P2 ligands. Series of inhibitors with variations at the P2 phenyloxazolidinone and the P2' phenylsulfonamide moieties were synthesized. Compounds with the (S)-enantiomer of substituted phenyloxazolidinones at P2 show highly potent inhibitory activities against HIV-1 protease. The inhibitors possessing 3-acetyl, 4-acetyl, and 3-trifluoromethyl groups at the phenyl ring of the oxazolidinone fragment are the most potent in each series, with K(i) values in the low picomolar (pM) range. The electron-donating groups 4-methoxy and 1,3-dioxolane are preferred at P2' phenyl ring, as compounds with other substitutions show lower binding affinities. Attempts to replace the isobutyl group at P1' with small cyclic moieties caused significant loss of affinities in the resulting compounds. Crystal structure analysis of the two most potent inhibitors in complex with the HIV-1 protease provided valuable information on the interactions between the inhibitor and the protease enzyme. In both inhibitor - enzyme complexes, the carbonyl group of the oxazolidinone ring makes hydrogenbond interactions with relatively conserved Asp29 residue of the protease. Potent inhibitors from each series incorporating various phenyloxazolidinone based P2 ligands were selected and their activities against a panel of multidrug-resistant (MDR) protease variants were determined. Interestingly, the most potent protease inhibitor starts out with extremely tight affinity for the wild-type enzyme (K(i) = 0.8 pM), and even against the MDR variants it retains picomolar to low nanomolar K(i), which is highly comparable with the best FDA-approved protease inhibitors.

摘要

在此,我们描述了新型HIV-1蛋白酶抑制剂的设计、合成及生物学评价,这些抑制剂将N-苯基恶唑烷酮-5-甲酰胺作为P2配体引入到(羟乙氨基)磺酰胺骨架中。合成了一系列在P2苯基恶唑烷酮和P2'苯基磺酰胺部分存在差异的抑制剂。在P2处具有取代苯基恶唑烷酮的(S)-对映体的化合物对HIV-1蛋白酶显示出高效的抑制活性。在恶唑烷酮片段的苯环上具有3-乙酰基、4-乙酰基和3-三氟甲基基团的抑制剂在每个系列中最为有效,其抑制常数(K(i))值处于低皮摩尔(pM)范围。在P2'苯环上,供电子基团4-甲氧基和1,3-二氧戊环是优选的,因为具有其他取代基的化合物显示出较低的结合亲和力。尝试用小的环状基团取代P1'处的异丁基会导致所得化合物的亲和力显著丧失。对两种最有效的抑制剂与HIV-1蛋白酶形成的复合物进行晶体结构分析,为抑制剂与蛋白酶之间的相互作用提供了有价值的信息。在两种抑制剂 - 酶复合物中,恶唑烷酮环的羰基与蛋白酶相对保守的Asp29残基形成氢键相互作用。从每个系列中选择了包含各种基于苯基恶唑烷酮的P2配体的高效抑制剂,并测定了它们对一组多药耐药(MDR)蛋白酶变体的活性。有趣的是,最有效的蛋白酶抑制剂对野生型酶具有极高的亲和力(K(i) = 0.8 pM),甚至对MDR变体也保留了皮摩尔至低纳摩尔的K(i),这与美国食品药品监督管理局(FDA)批准的最佳蛋白酶抑制剂高度可比。

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