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尿素晶体结构与内聚能的从头算研究。

Ab initio investigation of structure and cohesive energy of crystalline urea.

作者信息

Civalleri B, Doll K, Zicovich-Wilson C M

机构信息

Dipartimento di Chimica IFM and NIS Centre of Excellence, Università di Torino, Via P. Giuria 7, 10125 Torino, Italy.

出版信息

J Phys Chem B. 2007 Jan 11;111(1):26-33. doi: 10.1021/jp065757c.

Abstract

The structure and cohesive energy of crystalline urea have been investigated at the ab initio level of calculation. The performance of different Hamiltonians in dealing with a hydrogen-bonded molecular crystal as crystalline urea is assessed. Detailed calculations carried out by adopting both HF and some of the most popular DFT methods in solid-state chemistry are reported. Local, gradient-corrected, and hybrid functionals have been adopted: SVWN, PW91, PBE, B3LYP, and PBE0. First, a 6-31G(d,p) basis set has been adopted, and then the basis set dependence of computed results has been investigated at the B3LYP level. All calculations were carried out by using a development version of the periodic ab initio code CRYSTAL06, which allows full optimization of lattice parameters and atomic coordinates. With the 6-31G(d,p) basis set, structural features are well reproduced by hybrid methods and GGA. LDA gives lattice parameters and hydrogen-bond distances that are too small relative to experiment, while at the HF level the opposite trend is observed. Results show that hybrid methods are more accurate than HF and both LDA and GGA functionals, with a trend in the computed properties similar to that of hydrogen-bonded molecular complexes. When BSSE and ZPE are taken into account, all methods, except LDA, give computed cohesive energies that are underestimated with respect to the experimental sublimation enthalpy. Dispersion energy, not properly taken into account by DFT methods, plays a crucial role. Such a deficiency also affects dramatically the computed crystalline structure, especially when large basis sets are adopted. We show that this is an artifact due to the BSSE. Indeed, with small basis sets the BSSE gives an extra-binding that compensates for the missing dispersion forces, thus yielding structures in fortuitous agreement with experiment.

摘要

在从头算计算水平上研究了结晶尿素的结构和内聚能。评估了不同哈密顿量在处理如结晶尿素这样的氢键分子晶体时的性能。报告了采用HF以及固态化学中一些最常用的DFT方法进行的详细计算。采用了局域、梯度校正和杂化泛函:SVWN、PW91、PBE、B3LYP和PBE0。首先,采用6-31G(d,p)基组,然后在B3LYP水平上研究了计算结果对基组的依赖性。所有计算均使用周期性从头算代码CRYSTAL06的开发版本进行,该版本允许对晶格参数和原子坐标进行完全优化。使用6-31G(d,p)基组时,杂化方法和广义梯度近似(GGA)能很好地再现结构特征。局域密度近似(LDA)给出的晶格参数和氢键距离相对于实验值过小,而在HF水平上观察到相反的趋势。结果表明,杂化方法比HF以及LDA和GGA泛函更准确,计算性质的趋势与氢键分子复合物相似。当考虑基组重叠误差(BSSE)和零点能(ZPE)时,除LDA外的所有方法给出的计算内聚能相对于实验升华焓都被低估。色散能在DFT方法中未得到恰当考虑,起着关键作用。这种不足也极大地影响了计算的晶体结构,尤其是在采用大基组时。我们表明这是由于BSSE导致的假象。实际上,使用小基组时,BSSE给出了额外的结合能,补偿了缺失的色散力,从而产生了与实验偶然相符的结构。

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