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一种复杂有机分子(DTC)构象多晶型的变温X射线衍射及理论研究

A variable-temperature X-ray diffraction and theoretical study of conformational polymorphism in a complex organic molecule (DTC).

作者信息

Gionda Andrea, Macetti Giovanni, Loconte Laura, Rizzato Silvia, Orlando Ahmed M, Gatti Carlo, Lo Presti Leonardo

机构信息

Università degli Studi di Milano, Department of Chemistry Via Golgi 19 I-20133 Milano Italy

Centre for Materials Crystallography, Århus University Langelandsgade 140, DK-8000 Århus C Denmark.

出版信息

RSC Adv. 2018 Nov 14;8(67):38445-38454. doi: 10.1039/c8ra08063a.

DOI:10.1039/c8ra08063a
PMID:35559076
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9090575/
Abstract

Two conformational crystal polymorphs of 3-diethylamino-4-(4-methoxyphenyl)-1,1-dioxo-4-1λ,2-thiazete-4-carbonitrile (DTC) have been analyzed in the 100 K-room temperature range by single crystal X-ray diffraction and high quality DFT calculations. DTC has strongly polar as well as aliphatic substituents but no hydrogen bonding groups, and thus qualifies as a test molecule for the relative importance of electrostatic dispersion-repulsion terms. The two polymorphs have the same 2/ space group and differ by a flipping of the -OCH group, the two conformations being almost equi-energetic and separated by a low barrier. The system is monotropic in the observed temperature range with nearly identical thermal expansion coefficients and energy-temperature slopes, one phase consistently predicted to be more stable in agreement with the relative ease of appearance. Energy decompositions show that the electrostatic term is dominant and stabilizes with decreasing temperature. Dispersion and repulsion show the expected behavior, the former becoming more stabilizing at lower temperature in contrast with increasing repulsion at higher density. Absolute values and trends are very similar in the two phases, explaining the small total energy difference. Geometrical analyses of intermolecular contacts using fingerprint plots, as well as the study of molecular dipole moments as a function of in the framework of the Quantum Theory of Atoms in Molecules, reveal more details of phase stability.

摘要

通过单晶X射线衍射和高质量密度泛函理论(DFT)计算,在100 K至室温范围内对3 - 二乙氨基 - 4 -(4 - 甲氧基苯基)- 1,1 - 二氧代 - 4 - 1λ,2 - 噻嗪 - 4 - 腈(DTC)的两种构象晶体多晶型物进行了分析。DTC具有强极性以及脂肪族取代基,但没有氢键基团,因此可作为测试分子来研究静电、色散 - 排斥项的相对重要性。这两种多晶型物具有相同的空间群,仅 -OCH基团发生了翻转,两种构象的能量几乎相等,且由一个低势垒隔开。在观察到的温度范围内,该体系是单向的,具有几乎相同的热膨胀系数和能量 - 温度斜率,根据相对容易出现的情况,一致预测其中一个相更稳定。能量分解表明,静电项占主导地位且随温度降低而稳定。色散和排斥表现出预期的行为,前者在较低温度下变得更稳定,而后者在较高密度下增加。两个相中的绝对值和趋势非常相似,这解释了总能量差较小的原因。使用指纹图谱对分子间接触进行几何分析,以及在分子中的原子量子理论框架内研究分子偶极矩随温度的变化,揭示了相稳定性的更多细节。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c4b/9090575/3a707d0ae508/c8ra08063a-f6.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c4b/9090575/3a707d0ae508/c8ra08063a-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c4b/9090575/c1c1f43ce6af/c8ra08063a-s1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c4b/9090575/30c1cc04b897/c8ra08063a-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c4b/9090575/be4036dd2b46/c8ra08063a-f2.jpg
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