Dyer R Brian
Chemistry Division, MS J567, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.
Curr Opin Struct Biol. 2007 Feb;17(1):38-47. doi: 10.1016/j.sbi.2007.01.001. Epub 2007 Jan 12.
Ultrafast folding proteins have served an important role in benchmarking molecular dynamics simulations and testing protein folding theories. These proteins are simple enough and fold fast enough that realistic simulations are possible, which facilitates the direct comparison of absolute folding rates and folding mechanisms with those observed experimentally. Such comparisons have achieved remarkable success, but have also revealed the shortcomings that remain in experiment, theory and simulation alike. Some ultrafast folding proteins may fold without encountering an activation barrier (downhill folding), allowing the exploration of the molecular timescale of folding and the roughness of the energy landscape. The biological significance of ultrafast folding remains uncertain, but its practical significance is crucial to progress in understanding how proteins fold.
超快折叠蛋白在分子动力学模拟的基准测试和蛋白质折叠理论的检验中发挥了重要作用。这些蛋白质足够简单且折叠速度足够快,从而能够进行逼真的模拟,这便于将绝对折叠速率和折叠机制与实验观察结果进行直接比较。此类比较已取得显著成功,但也揭示了实验、理论和模拟中仍然存在的不足之处。一些超快折叠蛋白可能在不遇到活化能垒的情况下折叠(下坡折叠),这有助于探索折叠的分子时间尺度和能量景观的粗糙度。超快折叠的生物学意义仍然不确定,但其实际意义对于理解蛋白质如何折叠的进展至关重要。