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使用针对三个短串联重复序列(STR)位点(CSF1P0、D8S1179和D13S317)重新设计的新型灵敏引物,对经布安氏液固定、石蜡包埋的存档组织进行STR分型。

STR typing of archival Bouin's fluid-fixed paraffin-embedded tissue using new sensitive redesigned primers for three STR loci (CSF1P0, D8S1179 and D13S317).

作者信息

Turrina Stefania, Atzei Renzo, Filippini Giulia, De Leo Domenico

机构信息

Department of Medicine and Public Health, Institute of Legal Medicine, Forensic Genetic Laboratory, University of Verona, 37134 Verona, Italy.

出版信息

J Forensic Leg Med. 2008 Jan;15(1):27-31. doi: 10.1016/j.jcfm.2006.10.012. Epub 2007 Jan 18.

DOI:10.1016/j.jcfm.2006.10.012
PMID:17239646
Abstract

Three new mini-STR primer sets are suggested for three conventional STRs, CSF1P0, D8S1179 and D13S317, included in multiplex PCR kits commercially available and commonly used for DNA typing in forensic applications. The primer pairs for the three loci were redesigned in order to reduce or eliminate the flanking regions of the polymorphism obtaining amplification products, which have dimensions less than 120bp in size. A comparison of results for typing carried out with the newly designed primers on DNA extracted from 100 blood samples provided by healthy donors, previously typed with conventional STRs, showed no genotype difference underlining their precision and reproducibility. The forensic usefulness of the new mini-STR primers was evaluated on highly degraded DNA from casework samples (e.g. archival post-mortem Bouin's fluid-fixed paraffin-embedded tissue specimens) for which commercial STR kit had proven inefficient.

摘要

针对商业上可获得且常用于法医应用中DNA分型的多重PCR试剂盒中包含的三个传统STR(CSF1P0、D8S1179和D13S317),建议使用三种新的微型STR引物组。重新设计了这三个基因座的引物对,以减少或消除多态性的侧翼区域,从而获得大小小于120bp的扩增产物。对从100名健康献血者提供的血液样本中提取的DNA进行分型,这些样本之前已用传统STR进行过分型,结果显示,使用新设计的引物进行分型的结果与之前一致,没有基因型差异,突出了它们的准确性和可重复性。在来自实际案件样本(如存档的死后经布因氏液固定的石蜡包埋组织标本)的高度降解DNA上评估了新微型STR引物的法医实用性,而商业STR试剂盒已证明对这些样本无效。

相似文献

1
STR typing of archival Bouin's fluid-fixed paraffin-embedded tissue using new sensitive redesigned primers for three STR loci (CSF1P0, D8S1179 and D13S317).使用针对三个短串联重复序列(STR)位点(CSF1P0、D8S1179和D13S317)重新设计的新型灵敏引物,对经布安氏液固定、石蜡包埋的存档组织进行STR分型。
J Forensic Leg Med. 2008 Jan;15(1):27-31. doi: 10.1016/j.jcfm.2006.10.012. Epub 2007 Jan 18.
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Validation of short tandem repeats (STRs) for forensic usage: performance testing of fluorescent multiplex STR systems and analysis of authentic and simulated forensic samples.用于法医用途的短串联重复序列(STR)验证:荧光多重STR系统的性能测试以及真实和模拟法医样本分析
J Forensic Sci. 2001 May;46(3):647-60.
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[STR genotyping in unbuffered formalin fixed paraffin embedded tissue].[未缓冲甲醛固定石蜡包埋组织中的STR基因分型]
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Development and validation of the AmpFlSTR MiniFiler PCR Amplification Kit: a MiniSTR multiplex for the analysis of degraded and/or PCR inhibited DNA.AmpFlSTR MiniFiler PCR扩增试剂盒的开发与验证:一种用于分析降解和/或PCR抑制DNA的MiniSTR复合扩增体系
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A study on the effects of degradation and template concentration on the amplification efficiency of the STR Miniplex primer sets.一项关于降解和模板浓度对STR复合引物组扩增效率影响的研究。
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Analysis of artificially degraded DNA using STRs and SNPs--results of a collaborative European (EDNAP) exercise.使用短串联重复序列(STR)和单核苷酸多态性(SNP)对人工降解DNA进行分析——欧洲DNA分析方法工作组(EDNAP)协作研究的结果
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A new sensitive short pentaplex (ShoP) PCR for typing of degraded DNA.一种用于降解DNA分型的新型灵敏短五重(ShoP)PCR。
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Characterization of new miniSTR loci to aid analysis of degraded DNA.用于辅助降解DNA分析的新型微型短串联重复序列(miniSTR)基因座的特征分析
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The development of reduced size STR amplicons as tools for analysis of degraded DNA.作为降解DNA分析工具的小型化STR扩增子的开发。
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