• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用原子力显微镜校正聚合物系链单分子力谱中的系统误差。

Correction of systematic errors in single-molecule force spectroscopy with polymeric tethers by atomic force microscopy.

作者信息

Ray Chad, Brown Jason R, Akhremitchev Boris B

机构信息

Department of Chemistry, Duke University, Durham, North Carolina 27708, USA.

出版信息

J Phys Chem B. 2007 Mar 1;111(8):1963-74. doi: 10.1021/jp065530h. Epub 2007 Feb 7.

DOI:10.1021/jp065530h
PMID:17284065
Abstract

Single-molecule force spectroscopy has become a valuable tool for the investigation of intermolecular energy landscapes for a wide range of molecular associations. Atomic force microscopy (AFM) is often used as an experimental technique in these measurements, and the Bell-Evans model is commonly used in the statistical analysis of rupture forces. Most applications of the Bell-Evans model consider a constant loading rate of force applied to the intermolecular bond. The data analysis is often inconsistent because either the probe velocity or the apparent loading rate is being used as an independent parameter. These approaches provide different results when used in AFM-based experiments. Significant variations in results arise from the relative stiffness of the AFM force sensor in comparison with the stiffness of polymeric tethers that link the molecules under study to the solid surfaces. An analytical model presented here accounts for the systematic errors in force-spectroscopy parameters arising from the nonlinear loading induced by polymer tethers. The presented analytical model is based on the Bell-Evans model of the kinetics of forced dissociation and on the asymptotic models of tether stretching. The two most common data reduction procedures are analyzed, and analytical expressions for the systematic errors are provided. The model shows that the barrier width is underestimated and that the dissociation rate is significantly overestimated when force-spectroscopy data are analyzed without taking into account the elasticity of the polymeric tether. Systematic error estimates for asymptotic freely jointed chain and wormlike chain polymer models are given for comparison. The analytical model based on the asymptotic freely jointed chain stretching is employed to analyze and correct the results of the double-tether force-spectroscopy experiments of disjoining "hydrophobic bonds" between individual hexadecane molecules that are covalently tethered via poly(ethylene glycol) linkers of different lengths to the substrates and to the AFM probes. Application of the correction algorithm decreases the spread of the data from the mean value, which is particularly important for measurements of the dissociation rate, and increases the barrier width to 0.43 nm, which might be indicative of the theoretically predicted hydrophobic dewetting.

摘要

单分子力谱已成为研究广泛分子缔合的分子间能量景观的重要工具。原子力显微镜(AFM)常被用作这些测量中的实验技术,而贝尔 - 埃文斯模型通常用于断裂力的统计分析。贝尔 - 埃文斯模型的大多数应用都考虑作用于分子间键的力的恒定加载速率。由于将探针速度或表观加载速率用作独立参数,数据分析往往不一致。这些方法在基于AFM的实验中使用时会产生不同的结果。与将研究中的分子连接到固体表面的聚合物系链的刚度相比,AFM力传感器的相对刚度会导致结果出现显著差异。本文提出的一个分析模型考虑了由聚合物系链引起的非线性加载导致的力谱参数的系统误差。所提出的分析模型基于强迫解离动力学的贝尔 - 埃文斯模型和系链拉伸的渐近模型。分析了两种最常见的数据简化程序,并给出了系统误差的解析表达式。该模型表明,在分析力谱数据时,如果不考虑聚合物系链的弹性,势垒宽度会被低估,解离速率会被显著高估。给出了渐近自由连接链和蠕虫状链聚合物模型的系统误差估计值以供比较。基于渐近自由连接链拉伸的分析模型被用于分析和校正通过不同长度的聚乙二醇连接子共价连接到基底和AFM探针上的单个十六烷分子之间“疏水键”解离的双系链力谱实验结果。校正算法的应用减少了数据相对于平均值的离散度,这对于解离速率的测量尤为重要,并将势垒宽度增加到0.43 nm,这可能表明了理论预测的疏水去湿现象。

相似文献

1
Correction of systematic errors in single-molecule force spectroscopy with polymeric tethers by atomic force microscopy.利用原子力显微镜校正聚合物系链单分子力谱中的系统误差。
J Phys Chem B. 2007 Mar 1;111(8):1963-74. doi: 10.1021/jp065530h. Epub 2007 Feb 7.
2
Rupture force analysis and the associated systematic errors in force spectroscopy by AFM.原子力显微镜力谱中的破裂力分析及相关系统误差
Langmuir. 2007 May 22;23(11):6076-83. doi: 10.1021/la070131e. Epub 2007 Apr 18.
3
Pairwise interactions between linear alkanes in water measured by AFM force spectroscopy.通过原子力显微镜力谱法测量水中直链烷烃之间的成对相互作用。
J Am Chem Soc. 2008 Jul 30;130(30):10008-18. doi: 10.1021/ja801568y. Epub 2008 Jul 3.
4
Single-molecule force spectroscopy measurements of "hydrophobic bond" between tethered hexadecane molecules.tethered十六烷分子间“疏水键”的单分子力谱测量
J Phys Chem B. 2006 Sep 7;110(35):17578-83. doi: 10.1021/jp063517r.
5
On the detection of single bond ruptures in dynamic force spectroscopy by AFM.利用原子力显微镜在动态力谱中检测单键断裂。
Langmuir. 2011 Sep 20;27(18):11287-91. doi: 10.1021/la202530j. Epub 2011 Aug 17.
6
Dynamic force spectroscopy of the digoxigenin-antibody complex.地高辛配体-抗体复合物的动态力谱分析
FEBS Lett. 2006 Jan 23;580(2):505-9. doi: 10.1016/j.febslet.2005.12.052. Epub 2005 Dec 27.
7
Measuring the force of single protein molecule detachment from surfaces with AFM.用原子力显微镜测量单个蛋白质分子从表面脱离的力。
Colloids Surf B Biointerfaces. 2010 Jan 1;75(1):252-9. doi: 10.1016/j.colsurfb.2009.08.041. Epub 2009 Sep 3.
8
Viscoelastic properties of single poly(ethylene glycol) molecules.单个聚乙二醇分子的粘弹性特性。
Chemphyschem. 2006 Aug 11;7(8):1710-6. doi: 10.1002/cphc.200600116.
9
Force spectroscopy of quadruple H-bonded dimers by AFM: dynamic bond rupture and molecular time-temperature superposition.通过原子力显微镜对四重氢键二聚体进行力谱分析:动态键断裂与分子时间-温度叠加
J Am Chem Soc. 2005 Aug 17;127(32):11230-1. doi: 10.1021/ja0531475.
10
Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides.PDZ结构域与其识别肽之间特异性相互作用的动态力谱分析。
Langmuir. 2007 Feb 27;23(5):2668-73. doi: 10.1021/la0627011. Epub 2007 Feb 2.

引用本文的文献

1
Interplay between Viscoelasticity and Force Rate Affects Sequential Unfolding in Polyproteins Pulled at Constant Velocity.粘弹性与力速率之间的相互作用影响以恒定速度拉伸的多聚蛋白的顺序解折叠。
Macromolecules. 2020 Apr 28;53(8):3021-3029. doi: 10.1021/acs.macromol.0c00278. Epub 2020 Apr 14.
2
How Do We Know when Single-Molecule Force Spectroscopy Really Tests Single Bonds?单分子力谱技术真的能检测单键吗?
Biophys J. 2018 May 8;114(9):2032-2039. doi: 10.1016/j.bpj.2018.04.002.
3
Improving estimation of kinetic parameters in dynamic force spectroscopy using cluster analysis.
利用聚类分析提高动态力谱中动力学参数的估计。
J Chem Phys. 2018 Mar 28;148(12):123301. doi: 10.1063/1.5001325.
4
Molecular engineering of mechanophore activity for stress-responsive polymeric materials.用于应力响应聚合物材料的机械活性基团活性的分子工程
Chem Sci. 2015 Apr 16;6(4):2158-2165. doi: 10.1039/c4sc01945h. Epub 2015 Feb 12.
5
Role of monomer arrangement in the amyloid self-assembly.单体排列在淀粉样蛋白自组装中的作用。
Biochim Biophys Acta. 2015 Mar;1854(3):218-28. doi: 10.1016/j.bbapap.2014.12.009. Epub 2014 Dec 24.
6
Direct correlation of single-molecule properties with bulk mechanical performance for the biomimetic design of polymers.直接将单分子性质与聚合物的宏观机械性能相关联,用于仿生聚合物的设计。
Nat Mater. 2014 Nov;13(11):1055-62. doi: 10.1038/nmat4090. Epub 2014 Sep 28.
7
Theory of rapid force spectroscopy.快速力谱理论
Nat Commun. 2014 Jul 31;5:4463. doi: 10.1038/ncomms5463.
8
Different roles of cadherins in the assembly and structural integrity of the desmosome complex.钙黏着蛋白在桥粒复合体组装及结构完整性中的不同作用。
J Cell Sci. 2014 May 15;127(Pt 10):2339-50. doi: 10.1242/jcs.146316. Epub 2014 Mar 7.
9
Two barriers or not? Dynamic force spectroscopy on the integrin α7β1 invasin complex.两个障碍还是没有?整合素 α7β1 入侵复合物的动态力谱研究。
Biophys J. 2013 Dec 17;105(12):2771-80. doi: 10.1016/j.bpj.2013.10.030.
10
A backbone lever-arm effect enhances polymer mechanochemistry.杠杆臂效应增强了聚合物机械化学。
Nat Chem. 2013 Feb;5(2):110-4. doi: 10.1038/nchem.1540. Epub 2012 Dec 23.