Jin Ji-Qiang, Cui Hai-Rui, Gong Xiao-Chun, Chen Wen-Yue, Xin Ya
Institute of Nuclear and Agricultural Sciences, Zhejiang University, Hangzhou, China.
Yi Chuan. 2007 Jan;29(1):103-8. doi: 10.1360/yc-007-0103.
Forty two tea varieties were analyzed by using 16 SSR primer sets derived from tea ESTs in this study, and 13 of the primer sets produced clear bands and 10 of them showed polymorphism, accounting for 76.9%. The PIC (polymorphism information content) for each polymorphic primer set varied from 0.522 to 0.866, with a average about 0.73. Totally 84 Genotypes and 74 alleles were detected in all materials by 10 polymorphic markers, with the range from 4 to 12 and from 3 to 10 for each polymorphic primer set, respectively. The genetic distance among 42 tea varieties varied from 0.074 to 0.667, averagely 0.363, suggesting that the materials used in the experiment possess a broad genetic variation. Based on the similarity coefficient about 0.55, all the tea varieties tested could be classified into 3 groups and most of them were in first group. The results of this study proved that the EST-SSR marker is very effective in evaluation of tea germplasms.
本研究利用16个来源于茶树EST的SSR引物对42个茶树品种进行分析,其中13对引物扩增出清晰条带,10对表现出多态性,多态性引物比例为76.9%。每个多态性引物的PIC(多态性信息含量)值在0.522至0.866之间,平均约为0.73。10个多态性标记在所有材料中共检测到84个基因型和74个等位基因,每个多态性引物分别检测到4至12个基因型和3至10个等位基因。42个茶树品种间的遗传距离在0.074至0.667之间,平均为0.363,表明试验材料具有较广泛的遗传变异。基于相似系数约0.55,所有供试茶树品种可分为3组,其中大部分品种归为第一组。本研究结果证明EST-SSR标记在茶树种质评价中非常有效。