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Structural basis for recognition and repair of the 3'-phosphate by NExo, a base excision DNA repair nuclease from Neisseria meningitidis.N 型脑膜炎奈瑟球菌碱基切除修复核酸内切酶 NExo 识别和修复 3'-磷酸基团的结构基础。
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ExoMeg1: a new exonuclease from metagenomic library.ExoMeg1:一种来自宏基因组文库的新核酸外切酶。
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本文引用的文献

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Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Human Ape2 protein has a 3'-5' exonuclease activity that acts preferentially on mismatched base pairs.人类Ape2蛋白具有3'-5'核酸外切酶活性,该活性优先作用于错配碱基对。
Nucleic Acids Res. 2006 May 10;34(9):2508-15. doi: 10.1093/nar/gkl259. Print 2006.
3
The Brucella abortus xthA-1 gene product participates in base excision repair and resistance to oxidative killing but is not required for wild-type virulence in the mouse model.流产布鲁氏菌xthA - 1基因产物参与碱基切除修复并具有抗氧化杀伤能力,但在小鼠模型中对野生型毒力并非必需。
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Activation of the Vibrio cholerae SOS response is not required for intestinal cholera toxin production or colonization.霍乱弧菌SOS反应的激活对于肠道霍乱毒素的产生或定殖并非必需。
Infect Immun. 2006 Feb;74(2):927-30. doi: 10.1128/IAI.74.2.927-930.2006.
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Ciprofloxacin and trimethoprim cause phage induction and virulence modulation in Staphylococcus aureus.环丙沙星和甲氧苄啶可诱导金黄色葡萄球菌的噬菌体并调节其毒力。
Antimicrob Agents Chemother. 2006 Jan;50(1):171-7. doi: 10.1128/AAC.50.1.171-177.2006.
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Meningococcal genome dynamics.脑膜炎球菌基因组动态变化
Nat Rev Microbiol. 2006 Jan;4(1):11-22. doi: 10.1038/nrmicro1324.
7
Molecular and biological roles of Ape1 protein in mammalian base excision repair.Ape1蛋白在哺乳动物碱基切除修复中的分子与生物学作用
DNA Repair (Amst). 2005 Dec 8;4(12):1442-9. doi: 10.1016/j.dnarep.2005.09.004. Epub 2005 Sep 30.
8
After 30 years of study, the bacterial SOS response still surprises us.经过30年的研究,细菌的SOS反应仍然让我们感到惊讶。
PLoS Biol. 2005 Jul;3(7):e255. doi: 10.1371/journal.pbio.0030255. Epub 2005 Jul 12.
9
Two essential but distinct functions of the mammalian abasic endonuclease.哺乳动物无碱基内切核酸酶的两种重要但不同的功能。
Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5739-43. doi: 10.1073/pnas.0500986102. Epub 2005 Apr 11.
10
Antimutator role of DNA glycosylase MutY in pathogenic Neisseria species.DNA糖基化酶MutY在致病性奈瑟菌属中的抗突变作用。
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在DNA修复和细菌致病过程中具有不同活性的脱嘌呤嘧啶内切酶旁系同源物。

AP endonuclease paralogues with distinct activities in DNA repair and bacterial pathogenesis.

作者信息

Carpenter Elisabeth P, Corbett Anne, Thomson Hellen, Adacha Jolanta, Jensen Kirsten, Bergeron Julien, Kasampalidis Ioannis, Exley Rachel, Winterbotham Megan, Tang Christoph, Baldwin Geoff S, Freemont Paul

机构信息

Centre for Structural Biology, Division of Molecular Biosciences, Faculty of Natural Sciences, Imperial College London, London, UK.

出版信息

EMBO J. 2007 Mar 7;26(5):1363-72. doi: 10.1038/sj.emboj.7601593. Epub 2007 Feb 22.

DOI:10.1038/sj.emboj.7601593
PMID:17318183
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1817638/
Abstract

Oxidative stress is a principal cause of DNA damage, and mechanisms to repair this damage are among the most highly conserved of biological processes. Oxidative stress is also used by phagocytes to attack bacterial pathogens in defence of the host. We have identified and characterised two apurinic/apyrimidinic (AP) endonuclease paralogues in the human pathogen Neisseria meningitidis. The presence of multiple versions of DNA repair enzymes in a single organism is usually thought to reflect redundancy in activities that are essential for cellular viability. We demonstrate here that these two AP endonuclease paralogues have distinct activities in DNA repair: one is a typical Neisserial AP endonuclease (NApe), whereas the other is a specialised 3'-phosphodiesterase Neisserial exonuclease (NExo). The lack of AP endonuclease activity of NExo is shown to be attributable to the presence of a histidine side chain, blocking the abasic ribose-binding site. Both enzymes are necessary for survival of N. meningitidis under oxidative stress and during bloodstream infection. The novel functional pairing of NExo and NApe is widespread among bacteria and appears to have evolved independently on several occasions.

摘要

氧化应激是DNA损伤的主要原因,而修复这种损伤的机制是生物过程中最保守的机制之一。吞噬细胞也利用氧化应激来攻击细菌病原体以保护宿主。我们已经在人类病原体脑膜炎奈瑟菌中鉴定并表征了两种脱嘌呤/脱嘧啶(AP)内切核酸酶旁系同源物。通常认为在单个生物体中存在多个版本的DNA修复酶反映了对细胞活力至关重要的活性的冗余。我们在此证明这两种AP内切核酸酶旁系同源物在DNA修复中具有不同的活性:一种是典型的奈瑟菌AP内切核酸酶(NApe),而另一种是专门的3'-磷酸二酯酶奈瑟菌核酸外切酶(NExo)。结果表明,NExo缺乏AP内切核酸酶活性是由于存在组氨酸侧链,从而阻断了无碱基核糖结合位点。这两种酶对于脑膜炎奈瑟菌在氧化应激下和血流感染期间的存活都是必需的。NExo和NApe的这种新型功能配对在细菌中广泛存在,并且似乎已经在多个场合独立进化。