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双斑蟋浓核病毒的基因组表明昆虫杆状病毒相关的无包涵体浓核病毒存在古老的多样化。

The genome of Gryllus bimaculatus nudivirus indicates an ancient diversification of baculovirus-related nonoccluded nudiviruses of insects.

作者信息

Wang Yongjie, Kleespies Regina G, Huger Alois M, Jehle Johannes A

机构信息

Laboratory for Biotechnological Crop Protection, Department of Phytopathology, Agricultural Service Center Palatinate (DLR Rheinpfalz), Breitenweg 71, 67435 Neustadt an der Weinstrasse, Germany.

出版信息

J Virol. 2007 May;81(10):5395-406. doi: 10.1128/JVI.02781-06. Epub 2007 Mar 14.

Abstract

The Gryllus bimaculatus nudivirus (GbNV) infects nymphs and adults of the cricket Gryllus bimaculatus (Orthoptera: Gryllidae). GbNV and other nudiviruses such as Heliothis zea nudivirus 1 (HzNV-1) and Oryctes rhinoceros nudivirus (OrNV) were previously called "nonoccluded baculoviruses" as they share some similar structural, genomic, and replication aspects with members of the family Baculoviridae. Their relationships to each other and to baculoviruses are elucidated by the sequence of the complete genome of GbNV, which is 96,944 bp, has an AT content of 72%, and potentially contains 98 predicted protein-coding open reading frames (ORFs). Forty-one ORFs of GbNV share sequence similarities with ORFs found in OrNV, HzNV-1, baculoviruses, and bacteria. Most notably, 15 GbNV ORFs are homologous to the baculovirus core genes, which are associated with transcription (lef-8, lef-9, lef-4, vlf-1, and lef-5), replication (dnapol), structural proteins (p74, pif-1, pif-2, pif-3, vp91, and odv-e56), and proteins of unknown function (38K, ac81, and 19kda). Homologues to these baculovirus core genes have been predicted in HzNV-1 as well. Six GbNV ORFs are homologous to nonconserved baculovirus genes dnaligase, helicase 2, rr1, rr2, iap-3, and desmoplakin. However, the remaining 57 ORFs revealed no homology or poor similarities to the current gene databases. No homologous repeat (hr) sequences but fourteen short direct repeat (dr) regions were detected in the GbNV genome. Gene content and sequence similarity suggest that the nudiviruses GbNV, HzNV-1, and OrNV form a monophyletic group of nonoccluded double-stranded DNA viruses, which separated from the baculovirus lineage before this radiated into dipteran-, hymenopteran-, and lepidopteran-specific clades of occluded nucleopolyhedroviruses and granuloviruses. The accumulated information on the GbNV genome suggests that nudiviruses form a highly diverse and phylogenetically ancient sister group of the baculoviruses, which have evolved in a variety of highly divergent host orders.

摘要

双斑蟋裸病毒(GbNV)感染双斑蟋(直翅目:蟋蟀科)的若虫和成虫。GbNV以及其他裸病毒,如玉米螟裸病毒1(HzNV-1)和椰心叶甲裸病毒(OrNV),以前被称为“非包涵体杆状病毒”,因为它们在结构、基因组和复制方面与杆状病毒科的成员有一些相似之处。GbNV的全基因组序列阐明了它们彼此之间以及与杆状病毒的关系,该基因组为96,944 bp,AT含量为72%,可能包含98个预测的蛋白质编码开放阅读框(ORF)。GbNV的41个ORF与在OrNV、HzNV-1、杆状病毒和细菌中发现的ORF具有序列相似性。最值得注意的是,15个GbNV ORF与杆状病毒核心基因同源,这些基因与转录(lef-8、lef-9、lef-4、vlf-1和lef-5)、复制(dnapol)、结构蛋白(p74、pif-1、pif-2、pif-3、vp91和odv-e56)以及功能未知的蛋白质(38K、ac81和19kda)相关。在HzNV-1中也预测到了这些杆状病毒核心基因的同源物。6个GbNV ORF与非保守的杆状病毒基因dnaligase、解旋酶2、rr1、rr2、iap-3和桥粒斑蛋白同源。然而,其余57个ORF与当前的基因数据库没有同源性或相似性较差。在GbNV基因组中未检测到同源重复(hr)序列,但检测到14个短直接重复(dr)区域。基因内容和序列相似性表明,裸病毒GbNV、HzNV-1和OrNV形成了一个非包涵体双链DNA病毒的单系群,它们在杆状病毒谱系辐射到双翅目、膜翅目和鳞翅目特异性的包涵体核多角体病毒和颗粒体病毒分支之前就与之分离。关于GbNV基因组积累的信息表明裸病毒形成了杆状病毒的一个高度多样化且系统发育古老的姐妹群,杆状病毒已在各种高度分化的宿主目中进化。

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