Murkin Andrew S, Birck Matthew R, Rinaldo-Matthis Agnes, Shi Wuxian, Taylor Erika A, Almo Steven C, Schramm Vern L
Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461, USA.
Biochemistry. 2007 May 1;46(17):5038-49. doi: 10.1021/bi700147b. Epub 2007 Apr 4.
The X-ray crystal structures of human purine nucleoside phosphorylase (PNP) with bound inosine or transition-state analogues show His257 within hydrogen bonding distance of the 5'-hydroxyl. The mutants His257Phe, His257Gly, and His257Asp exhibited greatly decreased affinity for Immucillin-H (ImmH), binding this mimic of an early transition state as much as 370-fold (Km/Ki) less tightly than native PNP. In contrast, these mutants bound DADMe-ImmH, a mimic of a late transition state, nearly as well as the native enzyme. These results indicate that His257 serves an important role in the early stages of transition-state formation. Whereas mutation of His257 resulted in little variation in the PNP x DADMe-ImmH x SO4 structures, His257Phe x ImmH x PO4 showed distortion at the 5'-hydroxyl, indicating the importance of H-bonding in positioning this group during progression to the transition state. Binding isotope effect (BIE) and kinetic isotope effect (KIE) studies of the remote 5'-(3)H for the arsenolysis of inosine with native PNP revealed a BIE of 1.5% and an unexpectedly large intrinsic KIE of 4.6%. This result is interpreted as a moderate electronic distortion toward the transition state in the Michaelis complex with continued development of a similar distortion at the transition state. The mutants His257Phe, His257Gly, and His257Asp altered the 5'-(3)H intrinsic KIE to -3, -14, and 7%, respectively, while the BIEs contributed 2, 2, and -2%, respectively. These surprising results establish that forces in the Michaelis complex, reported by the BIEs, can be reversed or enhanced at the transition state.
人嘌呤核苷磷酸化酶(PNP)与结合的肌苷或过渡态类似物的X射线晶体结构显示,His257处于5'-羟基的氢键距离内。His257Phe、His257Gly和His257Asp突变体对Immucillin-H(ImmH)的亲和力大幅降低,与天然PNP相比,结合这种早期过渡态模拟物的紧密程度低达370倍(Km/Ki)。相比之下,这些突变体与晚期过渡态模拟物DADMe-ImmH的结合情况与天然酶几乎相同。这些结果表明,His257在过渡态形成的早期阶段发挥着重要作用。虽然His257的突变在PNP x DADMe-ImmH x SO4结构中几乎没有变化,但His257Phe x ImmH x PO4在5'-羟基处出现了扭曲,表明氢键在向过渡态进展过程中对该基团定位的重要性。对天然PNP催化肌苷砷解反应中远程5'-(3)H的结合同位素效应(BIE)和动力学同位素效应(KIE)研究显示,BIE为1.5%,内在KIE出人意料地高达4.6%。这一结果被解释为在米氏复合物中向过渡态有适度的电子扭曲,且在过渡态持续发展出类似的扭曲。His257Phe、His257Gly和His257Asp突变体分别将5'-(3)H内在KIE改变为-3%、-14%和7%,而BIE分别贡献了2%、2%和-2%。这些惊人的结果表明,由BIE报告的米氏复合物中的作用力在过渡态可能会被逆转或增强。