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结构多样的 N- 和 O- 甲基转移酶之间的趋同机制特征:甘氨酸 N- 甲基转移酶和儿茶酚 O- 甲基转移酶。

Convergent Mechanistic Features between the Structurally Diverse N- and O-Methyltransferases: Glycine N-Methyltransferase and Catechol O-Methyltransferase.

机构信息

Department of Chemistry, ‡Department of Molecular and Cell Biology, and §California Institute for Quantitative Biosciences, University of California , Berkeley, California 94720, United States.

出版信息

J Am Chem Soc. 2016 Jul 27;138(29):9158-65. doi: 10.1021/jacs.6b03462. Epub 2016 Jul 18.

Abstract

Although an enormous and still growing number of biologically diverse methyltransferases have been reported and identified, a comprehensive understanding of the enzymatic methyl transfer mechanism is still lacking. Glycine N-methyltransferase (GNMT), a member of the family that acts on small metabolites as the substrate, catalyzes methyl transfer from S-adenosyl-l-methionine (AdoMet) to glycine to form S-adenosyl-l-homocysteine and sarcosine. We report primary carbon ((12)C/(14)C) and secondary ((1)H3/(3)H3) kinetic isotope effects at the transferred methyl group, together with (1)H3/(3)H3 binding isotope effects for wild-type GNMT and a series of Tyr21 mutants. The data implicate a compaction effect in the methyl transfer step that is conferred by the protein structure. Furthermore, a remarkable similarity of properties is observed between GNMT and catechol O-methyltransferase, despite significant differences between these enzymes with regard to their active site structures and catalyzed reactions. We attribute these results to a catalytically relevant reduction in the methyl donor-acceptor distance that is dependent on a tyrosine side chain positioned behind the methyl-bearing sulfur of AdoMet.

摘要

尽管已经报道和鉴定了大量且仍在不断增加的具有生物多样性的甲基转移酶,但对于酶促甲基转移机制仍缺乏全面的了解。甘氨酸 N-甲基转移酶(GNMT)是作用于小分子代谢物作为底物的家族的一员,它催化 S-腺苷-L-甲硫氨酸(AdoMet)向甘氨酸的甲基转移,形成 S-腺苷-L-同型半胱氨酸和肌氨酸。我们报告了转移甲基的主要碳((12)C/(14)C)和次要((1)H3/(3)H3)同位素效应,以及野生型 GNMT 和一系列 Tyr21 突变体的(1)H3/(3)H3 结合同位素效应。这些数据表明,在甲基转移步骤中存在一种由蛋白质结构赋予的紧凑效应。此外,尽管 GNMT 和儿茶酚-O-甲基转移酶在活性位点结构和催化反应方面存在显著差异,但它们的性质非常相似。我们将这些结果归因于依赖于位于 AdoMet 带甲基的硫原子后面的酪氨酸侧链的甲基供体-受体距离的催化相关降低。

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