Crawford Douglas L, Oleksiak Marjorie F
Rosenstiel School of Marine and Atmospheric Sciences, Marine Biology and Fisheries, 4600 Rickenbacker Causeway, Miami, FL 33149, USA.
J Exp Biol. 2007 May;210(Pt 9):1613-21. doi: 10.1242/jeb.005454.
Functional genomics research using Fundulus heteroclitus has focused on variation among individuals because of the evolutionary importance and value of Fundulus in explaining the human condition (why individual humans are different and are affected differently by stress, disease and drugs). Among different populations and species of Fundulus, there are evolutionarily adaptive differences in gene expression. This natural variation in gene expression seems to affect cardiac metabolism because up to 81% of the variation in glucose utilization observed in isolated heart ventricles is related to specific patterns of gene expression. The surprising result from this research is that among different groups of individuals, the expression of mRNA from different metabolic pathways explains substrate-specific metabolism. For example, variation in oxidative phosphorylation mRNAs explains glucose metabolism for one group of individuals but expression of glucose metabolism genes explains this metabolism in a different group of individuals. This variation among individuals has important implications for studies using inbred strains: conclusions based on one individual or one strain will not necessarily reflect a generalized conclusion for a population or species. Finally, there are surprisingly strong positive and negative correlations among metabolic genes, both within and between pathways. These data suggest that measures of mRNA expression are meaningful, yet there is a complexity in how gene expression is related to physiological processes.
使用底鳉进行的功能基因组学研究聚焦于个体间的差异,因为底鳉在解释人类状况(即为何个体人类存在差异以及对压力、疾病和药物的反应为何不同)方面具有进化重要性和价值。在不同种群和物种的底鳉中,基因表达存在进化适应性差异。这种基因表达的自然变异似乎会影响心脏代谢,因为在离体心室中观察到的葡萄糖利用差异中,高达81%与特定的基因表达模式有关。这项研究的惊人结果是,在不同个体组中,来自不同代谢途径的mRNA表达解释了底物特异性代谢。例如,氧化磷酸化mRNA的差异解释了一组个体的葡萄糖代谢,但葡萄糖代谢基因的表达则解释了另一组个体的这种代谢。个体间的这种差异对于使用近交系进行的研究具有重要意义:基于一个个体或一个品系得出的结论不一定能反映整个种群或物种的普遍结论。最后,代谢基因之间,无论是在途径内还是途径间,都存在惊人的强正相关和负相关。这些数据表明,mRNA表达的测量是有意义的,但基因表达与生理过程之间的关系存在复杂性。