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恒河猴中MIC基因多态性与单倍型多样性

MIC gene polymorphism and haplotype diversity in rhesus macaques.

作者信息

Doxiadis G G M, Heijmans C M, Otting N, Bontrop R E

机构信息

Department of Comparative Genetics & Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

出版信息

Tissue Antigens. 2007 Mar;69(3):212-9. doi: 10.1111/j.1399-0039.2006.00791.x.

Abstract

Rhesus macaques (Macaca mulatta) mainly originating from India were analysed for their major histocompatibility complex class I-related (MIC) gene repertoire. Thus far, three distinct genes, designated MIC1, MIC2 and MIC3, have been identified in the rhesus macaque. In addition, an MICD pseudogene has been described mapping apart from the other loci in a telomeric direction. Genomic comparisons and the presence of a characteristic microsatellite in exon 5 suggest that the MIC1 gene is the equivalent of the human MICA gene. Hence, the MIC2 gene, lacking the microsatellite - as do humans -, is considered to be the equivalent of human MICB. The MIC3 gene, a hybrid of MICA and MICB, seems to be generated by a crossing-over event with one breakpoint in intron 3 and accordingly is named MICA/B. Apart from their human counterparts, MICA, MICB and MICA/B cluster in separate branches in the phylogenetic tree, confirming the hybrid character of the MICA/B gene. Population analyses have shown that the various genes display polymorphism, and six MICA, five MICB and three MICA/B alleles have been identified. In the panel of homozygous typing cells, two distinct haplotype configurations have been defined by segregation analyses. Each haplotype comprises an MICB gene in conjunction with either an MICA or an MICA/B gene. Furthermore, the presence of a polymorphic microsatellite in the MICA and MICA/B alleles facilitates speedy and accurate haplotyping.

摘要

对主要源自印度的恒河猴(猕猴)的主要组织相容性复合体I类相关(MIC)基因库进行了分析。到目前为止,在恒河猴中已鉴定出三个不同的基因,分别命名为MIC1、MIC2和MIC3。此外,还描述了一个MICD假基因,它在端粒方向上与其他基因座分开定位。基因组比较以及外显子5中特征性微卫星的存在表明,MIC1基因等同于人类的MICA基因。因此,缺乏微卫星的MIC2基因(人类也如此)被认为等同于人类的MICB基因。MIC3基因是MICA和MICB的杂交体,似乎是由一次交换事件产生的,其中一个断点在内含子3中,因此被命名为MICA/B。除了它们的人类对应物外,MICA、MICB和MICA/B在系统发育树的不同分支中聚类,证实了MICA/B基因的杂交特性。群体分析表明,各种基因表现出多态性,已鉴定出六个MICA、五个MICB和三个MICA/B等位基因。在纯合分型细胞面板中,通过分离分析定义了两种不同的单倍型构型。每个单倍型包含一个与MICA或MICA/B基因结合的MICB基因。此外,MICA和MICA/B等位基因中多态性微卫星的存在有助于快速准确的单倍型分型。

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