• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在构象灵活的分子情况下,提高从粉末X射线衍射数据直接求解空间结构的效率。

Enhanced efficiency of direct-space structure solution from powder X-ray diffraction data in the case of conformationally flexible molecules.

作者信息

Hanson Andrew J, Cheung Eugene Y, Harris Kenneth D M

机构信息

School of Chemistry, Cardiff University, Park Place, Cardiff, CF10 3AT Wales, UK.

出版信息

J Phys Chem B. 2007 Jun 14;111(23):6349-56. doi: 10.1021/jp070954c. Epub 2007 May 22.

DOI:10.1021/jp070954c
PMID:17516675
Abstract

A strategy is reported for assessing the feasibility of molecular conformations within direct-space structure-solution calculations of organic molecular crystal structures from powder X-ray diffraction data, focusing in particular on the genetic algorithm technique for structure solution in which fitness is defined as a function of the whole-profile figure-of-merit Rwp. The strategy employs a readily computed distance-based function to assess the feasibility of the molecular conformation in each trial structure generated in the genetic algorithm calculation, and structures considered to have low-feasibility conformations are penalized within the evolutionary process. The strategy is shown to lead to significant improvements in the success rate of structure-solution calculations in the case of flexible molecules with a significant number of conformational degrees of freedom.

摘要

报道了一种用于评估从粉末X射线衍射数据进行有机分子晶体结构直接空间结构解析计算中分子构象可行性的策略,特别关注结构解析的遗传算法技术,其中适应度被定义为全谱品质因数Rwp的函数。该策略采用一种易于计算的基于距离的函数来评估遗传算法计算中生成的每个试验结构中分子构象的可行性,并且在进化过程中对被认为具有低可行性构象的结构进行惩罚。结果表明,对于具有大量构象自由度的柔性分子,该策略可显著提高结构解析计算的成功率。

相似文献

1
Enhanced efficiency of direct-space structure solution from powder X-ray diffraction data in the case of conformationally flexible molecules.在构象灵活的分子情况下,提高从粉末X射线衍射数据直接求解空间结构的效率。
J Phys Chem B. 2007 Jun 14;111(23):6349-56. doi: 10.1021/jp070954c. Epub 2007 May 22.
2
Residue-based charge flipping: a new variant of an emerging algorithm for structure solution from X-ray diffraction data.基于残基的电荷翻转:一种从X射线衍射数据解析结构的新兴算法的新变体。
J Phys Chem A. 2008 Jun 5;112(22):4863-8. doi: 10.1021/jp801185u. Epub 2008 May 8.
3
Counteracting stagnation in genetic algorithm calculations by implementation of a micro genetic algorithm strategy.通过实施微遗传算法策略来抵消遗传算法计算中的停滞现象。
Phys Chem Chem Phys. 2008 Dec 28;10(48):7262-9. doi: 10.1039/b807326k. Epub 2008 Oct 31.
4
Molecular structure of a D-homoandrostanyl steroid derivative: single crystal and powder diffraction analyses.一种D-高雄甾烷类固醇衍生物的分子结构:单晶和粉末衍射分析
J Phys Chem B. 2006 Aug 10;110(31):15127-33. doi: 10.1021/jp0612681.
5
The impact of powder diffraction on the structural characterization of organic crystalline materials.粉末衍射对有机晶体材料结构表征的影响。
Philos Trans A Math Phys Eng Sci. 2004 Dec 15;362(1825):2691-707. doi: 10.1098/rsta.2004.1457.
6
Powder diffraction crystallography of molecular solids.分子固体的粉末衍射晶体学
Top Curr Chem. 2012;315:133-77. doi: 10.1007/128_2011_251.
7
How to determine structures when single crystals cannot be grown: opportunities for structure determination of molecular materials using powder diffraction data.当无法生长出单晶时如何确定结构:利用粉末衍射数据确定分子材料结构的机遇
Chem Soc Rev. 2004 Oct 20;33(8):526-38. doi: 10.1039/b409059b. Epub 2004 Sep 22.
8
X-ray powder diffraction structure determination of gamma-butyrolactone at 180 K: phase-problem solution from the lattice energy minimization with two independent molecules.180K下γ-丁内酯的X射线粉末衍射结构测定:基于两个独立分子的晶格能量最小化解决相位问题
Acta Crystallogr B. 2005 Jun;61(Pt 3):312-20. doi: 10.1107/S0108768105005392. Epub 2005 May 13.
9
Molecular and crystalline structure of cycloheptanespiro-3'(4'H)-6',7',8',9'-tetrahydrocyclohexa[b][1,4]thiazole-2'(5'H)-thione from powder synchrotron X-ray diffraction data.基于粉末同步辐射X射线衍射数据的环庚烷螺-3'(4'H)-6',7',8',9'-四氢环六并[b][1,4]噻唑-2'(5'H)-硫酮的分子与晶体结构
Acta Crystallogr B. 2008 Apr;64(Pt 2):217-22. doi: 10.1107/S0108768108000190. Epub 2008 Mar 14.
10
Structure and conformational analysis of a bidentate pro-ligand, C21H34N2S2, from powder synchrotron diffraction data and solid-state DFTB calculations.基于粉末同步辐射衍射数据和固态密度泛函紧束缚理论计算的双齿前体配体C21H34N2S2的结构与构象分析
Acta Crystallogr B. 2009 Oct;65(Pt 5):639-46. doi: 10.1107/S0108768109027244. Epub 2009 Sep 17.

引用本文的文献

1
Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms.通过随机搜索与遗传算法相结合的方式从少量衍射数据中寻找晶体结构。
J Appl Crystallogr. 2008 Aug 1;41(Pt 4):784-790. doi: 10.1107/S0021889808020074. Epub 2008 Jul 16.