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基于粉末同步辐射X射线衍射数据的环庚烷螺-3'(4'H)-6',7',8',9'-四氢环六并[b][1,4]噻唑-2'(5'H)-硫酮的分子与晶体结构

Molecular and crystalline structure of cycloheptanespiro-3'(4'H)-6',7',8',9'-tetrahydrocyclohexa[b][1,4]thiazole-2'(5'H)-thione from powder synchrotron X-ray diffraction data.

作者信息

Avila Edward E, Mora Asiloé J, Delgado Gerzon E, Contreras Ricardo R, Fitch Andrew N, Brunelli Michela

机构信息

Laboratorio de Cristalografía, Departamento de Química, Facultad de Ciencias, Universidad de Los Andes 5101, Venezuela.

出版信息

Acta Crystallogr B. 2008 Apr;64(Pt 2):217-22. doi: 10.1107/S0108768108000190. Epub 2008 Mar 14.

DOI:10.1107/S0108768108000190
PMID:18369293
Abstract

A series of bidentate nitrogen-sulfur pro-ligands has been designed and synthesized with the purpose of introducing a structural modification that favours the tetrahedral site distortions of metalloprotein systems with metallic centers surrounded by ligands containing two N atoms and two S atoms as donor groups. Some of these new pro-ligands were obtained only as powders. Here we present the molecular and crystalline structure of cycloheptanespiro-3'(4'H)-6',7',8',9'-tetrahydrocyclohexa[b][1,4]thiazole-2'(5'H)-thione (I) solved and refined from powder synchrotron X-ray diffraction data. Two independent molecules comprising a total of 36 non-H atoms were obtained from the direct-methods solution and refined against the powder X-ray diffraction data using the Rietveld method. The molecular conformations of the heterocyclic benzothiazine ring, the fused heptenyl ring and the heptanyl spiro ring are thoroughly discussed and compared with VASP theoretical calculations and other related structures. The packing of molecules in (I) is based on hydrogen bonds of the type N-H...S and hydrophobic C-H interactions.

摘要

设计并合成了一系列双齿氮硫前体配体,目的是引入一种结构修饰,这种修饰有利于金属蛋白体系的四面体位点畸变,该体系的金属中心被含有两个氮原子和两个硫原子作为供体基团的配体所包围。其中一些新的前体配体仅以粉末形式获得。在此,我们展示了从粉末同步辐射X射线衍射数据解析并精修得到的环庚烷螺-3'(4'H)-6',7',8',9'-四氢环六并[b][1,4]噻唑-2'(5'H)-硫酮(I)的分子和晶体结构。通过直接法解析得到了两个独立的分子,共包含36个非氢原子,并使用Rietveld方法根据粉末X射线衍射数据进行了精修。对杂环苯并噻嗪环、稠合庚烯基环和庚基螺环的分子构象进行了深入讨论,并与VASP理论计算结果及其他相关结构进行了比较。(I)中分子的堆积基于N-H...S型氢键和疏水C-H相互作用。

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