Tu Jhe-Le, Chin Ko-Hsin, Wang Andrew H-J, Chou Shan-Ho
Institute of Biochemistry, National Chung-Hsing University, Taichung 40227, Taiwan.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1;63(Pt 5):438-42. doi: 10.1107/S1744309107018787. Epub 2007 Apr 20.
Bacterial UMP kinases (UMPKs) are crucial enzymes that are responsible for microbial UTP biosynthesis. Interestingly, eukaryotic and prokaryotic cells use different enzymes for UMP-phosphorylation reactions. Prokaryotic UMPKs are thus believed to be potential targets for antimicrobial drug development. Here, the cloning, expression and crystallization of SeMet-substituted XC1936, a bacterial UMPK from Xanthomonas campestris pathovar campestris, are reported. The crystallization of the apo-form UMPK was found to be significantly improved in a strong magnetic field; the crystals diffracted to a resolution of 2.35 A, a dramatic improvement over the original value of 3.6 A. Preliminary structural analyses of apo-form XC1936 using crystals grown in a strong magnetic field clearly reveal well defined loop regions involved in substrate-analogue binding that were previously not visible. Crystallization in a strong magnetic field thus was found to be indispensable in determining the flexible region of the XC1936 UMPK structure.
细菌尿苷一磷酸激酶(UMPK)是负责微生物三磷酸尿苷(UTP)生物合成的关键酶。有趣的是,真核细胞和原核细胞在UMP磷酸化反应中使用不同的酶。因此,原核UMPK被认为是抗菌药物开发的潜在靶点。本文报道了来自野油菜黄单胞菌野油菜致病变种的细菌UMPK——硒代甲硫氨酸取代的XC1936的克隆、表达和结晶。发现无配体形式的UMPK在强磁场中结晶得到显著改善;晶体衍射分辨率达到2.35 Å,相较于原来的3.6 Å有了显著提高。使用在强磁场中生长的晶体对无配体形式的XC1936进行的初步结构分析清楚地揭示了以前不可见的参与底物类似物结合的明确环区域。因此,发现在强磁场中结晶对于确定XC1936 UMPK结构的柔性区域是必不可少的。