• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

来自野油菜黄单胞菌的CN水解酶超家族蛋白XC1258的克隆、结晶及初步X射线研究

Cloning, crystallization and preliminary X-ray study of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris.

作者信息

Tsai Ying-Der, Chin Ko-Hsin, Shr Hui-Lin, Gao Fei Philip, Lyu Ping-Chiang, Wang Andrew H-J, Chou Shan-Ho

机构信息

Institute of Biochemistry, National Chung-Hsing University, Taichung 40227, Taiwan.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Oct 1;62(Pt 10):999-1002. doi: 10.1107/S1744309106035433. Epub 2006 Sep 30.

DOI:10.1107/S1744309106035433
PMID:17012795
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2225184/
Abstract

CN-hydrolase superfamily proteins are involved in a wide variety of non-peptide carbon-nitrogen hydrolysis reactions, producing some important natural products such as auxin, biotin, precursors of antibiotics etc. These reactions all involve attack on a cyano or carbonyl carbon by a conserved novel catalytic triad Glu-Lys-Cys through a thiol acylenzyme intermediate. However, classification into the CN-hydrolase superfamily based on sequence similarity alone is not straightforward and further structural data are necessary to improve this categorization. Here, the cloning, expression, crystallization and preliminary X-ray analysis of XC1258, a CN-hydrolase superfamily protein from the plant pathogen Xanthomonas campestris (Xcc), are reported. The SeMet-substituted XC1258 crystals diffracted to a resolution of 1.73 A. They are orthorhombic and belong to space group P2(1)2(1)2, with unit-cell parameters a = 143.8, b = 154.63, c = 51.3 A, respectively.

摘要

腈水解酶超家族蛋白参与多种非肽碳氮水解反应,产生一些重要的天然产物,如生长素、生物素、抗生素前体等。这些反应均涉及一个保守的新型催化三联体Glu-Lys-Cys通过硫醇酰基酶中间体对氰基或羰基碳的攻击。然而,仅基于序列相似性将其分类到腈水解酶超家族并不简单,还需要进一步的结构数据来改进这种分类。本文报道了来自植物病原菌野油菜黄单胞菌(Xcc)的腈水解酶超家族蛋白XC1258的克隆、表达、结晶及初步X射线分析。硒代甲硫氨酸取代的XC1258晶体衍射分辨率达到1.73 Å。它们为正交晶系,属于空间群P2(1)2(1)2,晶胞参数分别为a = 143.8、b = 154.63、c = 51.3 Å。

相似文献

1
Cloning, crystallization and preliminary X-ray study of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris.来自野油菜黄单胞菌的CN水解酶超家族蛋白XC1258的克隆、结晶及初步X射线研究
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Oct 1;62(Pt 10):999-1002. doi: 10.1107/S1744309106035433. Epub 2006 Sep 30.
2
Crystallization and preliminary X-ray analysis of XC1015, a histidine triad-like protein from Xanthomonas campestris.野油菜黄单胞菌中一种组氨酸三联体样蛋白XC1015的结晶及X射线初步分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Dec 1;62(Pt 12):1263-5. doi: 10.1107/S1744309106047580. Epub 2006 Nov 30.
3
The cloning, crystallization and preliminary X-ray analysis of XC2113, a YaeQ protein from Xanthomonas campestris.野油菜黄单胞菌YaeQ蛋白XC2113的克隆、结晶及初步X射线分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Oct 1;62(Pt 10):1046-8. doi: 10.1107/S1744309106038383. Epub 2006 Sep 30.
4
A putative polyketide-synthesis protein XC5357 from Xanthomonas campestris: heterologous expression, crystallization and preliminary X-ray analysis.来自野油菜黄单胞菌的一种假定聚酮化合物合成蛋白XC5357:异源表达、结晶及初步X射线分析。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt 7):697-9. doi: 10.1107/S1744309105018968. Epub 2005 Jun 30.
5
Crystallization and preliminary diffraction analysis of the catalytic domain of major extracellular endoglucanase from Xanthomonas campestris pv. campestris.野油菜黄单胞菌野油菜致病变种主要胞外内切葡聚糖酶催化结构域的结晶及初步衍射分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Feb 1;69(Pt 2):137-40. doi: 10.1107/S1744309112051408. Epub 2013 Jan 31.
6
The crystallization of apo-form UMP kinase from Xanthomonas campestris is significantly improved in a strong magnetic field.来自野油菜黄单胞菌的脱辅基形式的UMP激酶在强磁场中的结晶得到显著改善。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1;63(Pt 5):438-42. doi: 10.1107/S1744309107018787. Epub 2007 Apr 20.
7
Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of XC847, a 3'-5' oligoribonuclease from Xanthomonas campestris.野油菜黄单胞菌3'-5'寡核糖核酸酶XC847的克隆、纯化、结晶及初步X射线晶体学分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Oct 1;61(Pt 10):902-5. doi: 10.1107/S1744309105027132. Epub 2005 Sep 30.
8
Preliminary X-ray analysis of XC5848, a hypothetical ORFan protein with an Sm-like motif from Xanthomonas campestris.XC5848的初步X射线分析,XC5848是一种来自野油菜黄单胞菌的具有类Sm基序的假定孤儿蛋白。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Jan 1;63(Pt 1):30-3. doi: 10.1107/S1744309106052730. Epub 2006 Dec 16.
9
Cloning, expression, crystallization and preliminary X-ray analysis of a putative multiple antibiotic resistance repressor protein (MarR) from Xanthomonas campestris.来自野油菜黄单胞菌的一种假定多重抗生素抗性阻遏蛋白(MarR)的克隆、表达、结晶及初步X射线分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt 7):706-8. doi: 10.1107/S1744309105019548. Epub 2005 Jun 30.
10
Cloning, crystallization and preliminary X-ray studies of XC2981 from Xanthomonas campestris, a putative CutA1 protein involved in copper-ion homeostasis.野油菜黄单胞菌XC2981(一种参与铜离子稳态的假定CutA1蛋白)的克隆、结晶及初步X射线研究。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Nov 1;62(Pt 11):1113-5. doi: 10.1107/S1744309106039832. Epub 2006 Oct 20.

本文引用的文献

1
[28] Phase determination from multiwavelength anomalous diffraction measurements.[28] 基于多波长反常衍射测量的相位测定
Methods Enzymol. 1997;276:494-523. doi: 10.1016/S0076-6879(97)76074-9.
2
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
3
Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of XC847, a 3'-5' oligoribonuclease from Xanthomonas campestris.野油菜黄单胞菌3'-5'寡核糖核酸酶XC847的克隆、纯化、结晶及初步X射线晶体学分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Oct 1;61(Pt 10):902-5. doi: 10.1107/S1744309105027132. Epub 2005 Sep 30.
4
Crystal structure of a putative CN hydrolase from yeast.来自酵母的一种假定的氰水解酶的晶体结构。
Proteins. 2003 Aug 1;52(2):283-91. doi: 10.1002/prot.10417.
5
The nitrilase superfamily: classification, structure and function.腈水解酶超家族:分类、结构与功能。
Genome Biol. 2001;2(1):REVIEWS0001. doi: 10.1186/gb-2001-2-1-reviews0001. Epub 2001 Jan 15.
6
Crystal structure and site-directed mutagenesis studies of N-carbamoyl-D-amino-acid amidohydrolase from Agrobacterium radiobacter reveals a homotetramer and insight into a catalytic cleft.放射土壤杆菌N-氨甲酰-D-氨基酸酰胺水解酶的晶体结构和定点诱变研究揭示了一种同四聚体,并深入了解了催化裂隙。
J Mol Biol. 2001 Feb 16;306(2):251-61. doi: 10.1006/jmbi.2000.4380.
7
Crystal structure of the worm NitFhit Rosetta Stone protein reveals a Nit tetramer binding two Fhit dimers.线虫NitFhit罗塞塔石碑蛋白的晶体结构揭示了一个Nit四聚体结合两个Fhit二聚体。
Curr Biol. 2000;10(15):907-17. doi: 10.1016/s0960-9822(00)00621-7.
8
Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases.具有酰胺水解酶共有的新型催化框架的N-氨甲酰-D-氨基酸酰胺水解酶的晶体结构
Structure. 2000 Jul 15;8(7):729-37. doi: 10.1016/s0969-2126(00)00160-x.
9
The Pfam protein families database.Pfam蛋白质家族数据库。
Nucleic Acids Res. 2000 Jan 1;28(1):263-6. doi: 10.1093/nar/28.1.263.
10
Automated MAD and MIR structure solution.自动分子置换法和分子内旋转法结构解析
Acta Crystallogr D Biol Crystallogr. 1999 Apr;55(Pt 4):849-61. doi: 10.1107/s0907444999000839.