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量化重组酵母群体中的适应性分布和表型关系。

Quantifying fitness distributions and phenotypic relationships in recombinant yeast populations.

作者信息

Perlstein Ethan O, Deeds Eric J, Ashenberg Orr, Shakhnovich Eugene I, Schreiber Stuart L

机构信息

Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.

出版信息

Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10553-8. doi: 10.1073/pnas.0704037104. Epub 2007 Jun 12.

Abstract

Studies of the role of sex in evolution typically involve a longitudinal comparison of a single ancestor to several intermediate descendants and to one terminally evolved descendant after many generations of adaptation under a given selective regime. Here we take a complementary, statistical approach to sex in evolution, by describing the distribution of phenotypic similarity in a population of yeast F1 meiotic recombinants. By applying graph theory to fitness measurements of thousands of Saccharomyces cerevisiae recombinants treated with 10 mechanistically distinct, growth-inhibitory small-molecule perturbagens (SMPs), we show that the network of phenotypic similarity among F1 recombinants exhibits a scale-free degree distribution. F1 recombinants are often phenotypically unique and sometimes exceptional, and their fitness strengths are unevenly distributed across the 10 compound treatments. By contrast, highly phenotypically similar F1 recombinants constitute failing hubs that display below-average fitness across all compound treatments and are candidate substrates for purifying selection. Comparison of the F1 generation with the parental strains reveals that (i) there is a specialist more fit in any given single condition than any of the parents but (ii) only rarely are there generalists that exhibit greater fitness than both parental strains across a majority of conditions. This analysis allows us to evaluate and to gain better theoretical understanding of the costs and benefits of sex in the F1 generation.

摘要

关于性别在进化中的作用的研究通常涉及对一个单一祖先与多个中间后代以及在给定选择机制下经过多代适应后的一个最终进化后代进行纵向比较。在这里,我们采用一种互补的统计学方法来研究进化中的性别,即描述酵母F1减数分裂重组体群体中表型相似性的分布。通过将图论应用于数千个用10种具有不同作用机制的生长抑制性小分子干扰剂(SMP)处理的酿酒酵母重组体的适应性测量,我们表明F1重组体之间的表型相似性网络呈现出无标度度分布。F1重组体通常在表型上是独特的,有时甚至是异常的,并且它们的适应强度在10种化合物处理中分布不均。相比之下,表型高度相似的F1重组体构成了失败的枢纽,在所有化合物处理中表现出低于平均水平的适应性,并且是纯化选择的候选底物。将F1代与亲本菌株进行比较发现:(i)存在一种在任何给定单一条件下比任何亲本都更适应的特化类型,但(ii)只有极少数的泛化类型在大多数条件下表现出比双亲本菌株更高的适应性。这种分析使我们能够评估并更好地从理论上理解F1代中性别产生的成本和收益。

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Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae.酿酒酵母实验室菌株中升高的进化速率。
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Sex releases the speed limit on evolution.性别解除了进化的速度限制。
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