Krukau Aliaksei, Brovchenko Ivan, Geiger Alfons
Physical Chemistry, University of Dortmund, Dortmund D-44221, Germany.
Biomacromolecules. 2007 Jul;8(7):2196-202. doi: 10.1021/bm070233j. Epub 2007 Jun 14.
The conformation of a single elastin-like peptide GVG(VPGVG)3 in liquid water is studied by computer simulations in the temperature interval between 280 and 440 K. Two main conformational states of the peptide can be distinguished: a rigid conformational state, dominating at low temperatures, and a flexible conformational state, dominating at high temperatures. A temperature-induced transition between these states occurs at about 310 K, rather close to a transition temperature seen in experiments. This transition is accompanied by the thermal breaking of the hydrogen-bonded spanning network of the hydration water via a percolation transition upon heating. This finding indicates that the H-bond clustering structure of the hydration water plays an important role in the conformational stability of biomolecules. A second important observation is the Gaussian distribution of the end-to-end distance in the high-temperature state, which supports the idea of a rubber-like elasticity of the studied elastin-like peptide. Finally our results challenge the idea of the folding of elastin-like peptides upon heating.
通过计算机模拟研究了单个类弹性蛋白肽GVG(VPGVG)3在280至440 K温度区间内于液态水中的构象。该肽可区分出两种主要构象状态:一种是刚性构象状态,在低温下占主导;另一种是柔性构象状态,在高温下占主导。这两种状态之间的温度诱导转变发生在约310 K,相当接近实验中观察到的转变温度。这种转变伴随着加热时通过渗流转变使水化水的氢键跨越网络发生热断裂。这一发现表明水化水的氢键簇结构在生物分子的构象稳定性中起重要作用。第二个重要观察结果是高温状态下分子端到端距离的高斯分布,这支持了所研究的类弹性蛋白肽具有类橡胶弹性的观点。最后,我们的结果对类弹性蛋白肽加热时折叠的观点提出了挑战。