Crottini Angelica, Andreone Franco, Kosuch Joachim, Borkin Leo J, Litvinchuk Spartak N, Eggert Christophe, Veith Michael
Universitá degli Studi di Milano, Dipartimento di Biologia, Sezione di Zoologia e Citologia, Via Celoria 26, 20133 Milan, Italy.
Mol Ecol. 2007 Jul;16(13):2734-54. doi: 10.1111/j.1365-294X.2007.03274.x.
Pelobates fuscus is a fossorial amphibian that inhabits much of the European plain areas. To unveil traces of expansion and contraction events of the species' range, we sequenced 702 bp of the mitochondrial cytochrome b gene. To infer the population history we applied phylogeographical methods, such as nested clade phylogeographical analysis (NCPA), and used summary statistics to analyse population structure under a neutral model of evolution. Populations were assigned to different drainage systems and we tested hypotheses of explicit refugial models using information from analysis of molecular variance, nucleotide diversity, effective population size estimation, NCPA, mismatch distribution and Bayesian dating. Coalescent simulations were used as post hoc tests for plausibility of derived or a priori assumed biogeographical hypotheses. Our combination of all approaches enabled the reconstruction of the colonization history and phylogeography of P. fuscus and confirmed a previous assumption of the existence of two major genetic lineages within P. fuscus. Using the Afro-European vicariance of Pelobates cultripes and Pelobates varaldii and applying Bayesian dating we estimated the divergence of these phylogeographical lineages to the Pliocene. We suggest the existence of three different glacial refugia: (i) the area between the Caspian and Black Seas as the origin for the expansion of the 'eastern lineage'; (ii) the Danube system as a centre of diversity for part of the 'western lineage'; (iii) the Po Valley, the largest centre of genetic variability. This fits the hypothesis that climatic fluctuation was a key event for differentiation processes in P. fuscus.
棕背蟾蜍是一种穴居两栖动物,栖息于欧洲大部分平原地区。为了揭示该物种分布范围的扩张和收缩事件的痕迹,我们对线粒体细胞色素b基因的702个碱基对进行了测序。为了推断种群历史,我们应用了系统地理学方法,如嵌套分支系统地理学分析(NCPA),并使用汇总统计数据在中性进化模型下分析种群结构。种群被分配到不同的排水系统,我们利用分子方差分析、核苷酸多样性、有效种群大小估计、NCPA、错配分布和贝叶斯定年的信息,对明确的避难所模型假设进行了检验。合并模拟被用作事后检验,以验证推导或先验假设的生物地理学假设的合理性。我们综合所有方法,重建了棕背蟾蜍的定殖历史和系统地理学,并证实了之前关于棕背蟾蜍存在两个主要遗传谱系的假设。利用巴氏蟾蜍和瓦氏蟾蜍的非洲 - 欧洲间断分布,并应用贝叶斯定年,我们估计这些系统地理谱系的分歧发生在上新世。我们认为存在三个不同的冰川避难所:(i)里海和黑海之间的区域是“东部谱系”扩张的起源;(ii)多瑙河系统是“西部谱系”一部分的多样性中心;(iii)波河河谷是最大的遗传变异中心。这符合气候波动是棕背蟾蜍分化过程关键事件的假设。