Müller Axel, León-Kempis Maria Del R, Dodson Eleanor, Wilson Keith S, Wilkinson Anthony J, Kelly David J
Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York YO10 5YW, UK.
J Mol Biol. 2007 Sep 7;372(1):160-71. doi: 10.1016/j.jmb.2007.06.041. Epub 2007 Jun 19.
The PEB1a protein is an antigenic factor exposed on the surface of the food-borne human pathogen Campylobacter jejuni, which has a major role in adherence and host colonisation. PEB1a is also the periplasmic binding protein component of an aspartate/glutamate ABC transporter essential for optimal microaerobic growth on these dicarboxylic amino acids. Here, we report the crystal structure of PEB1a at 1.5 A resolution. The protein has a typical two-domain alpha/beta structure, characteristic of periplasmic extracytoplasmic solute receptors and a chain topology related to the type II subfamily. An aspartate ligand, clearly defined by electron density in the interdomain cleft, forms extensive polar interactions with the protein, the majority of which are made with the larger domain. Arg89 and Asp174 form ion-pairing interactions with the main chain alpha-carboxyl and alpha-amino-groups, respectively, of the ligand, while Arg67, Thr82, Lys19 and Tyr156 co-ordinate the ligand side-chain carboxyl group. Lys19 and Arg67 line a positively charged groove, which favours binding of Asp over the neutral Asn. The ligand-binding cleft is of sufficient depth to accommodate a glutamate. This is the first structure of an ABC-type aspartate-binding protein, and explains the high affinity of the protein for aspartate and glutamate, and its much weaker binding of asparagine and glutamine. Stopped-flow fluorescence spectroscopy indicates a simple bimolecular mechanism of ligand binding, with high association rate constants. Sequence alignments and phylogenetic analyses revealed PEB1a homologues in some Gram-positive bacteria. The alignments suggest a more distant homology with GltI from Escherichia coli, a known glutamate and aspartate-binding protein, but Lys19 and Tyr156 are not conserved in GltI. Our results provide a structural basis for understanding both the solute transport and adhesin/virulence functions of PEB1a.
PEB1a蛋白是食源性病原体空肠弯曲菌表面暴露的一种抗原因子,在黏附和宿主定殖中起主要作用。PEB1a也是天冬氨酸/谷氨酸ABC转运体的周质结合蛋白成分,该转运体对于这些二羧酸氨基酸的最佳微需氧生长至关重要。在此,我们报告了分辨率为1.5 Å的PEB1a晶体结构。该蛋白具有典型的双结构域α/β结构,这是周质胞外溶质受体的特征,并且链拓扑结构与II型亚家族相关。一个天冬氨酸配体在结构域间裂隙中由电子密度清晰界定,与该蛋白形成广泛的极性相互作用,其中大部分与较大的结构域形成。Arg89和Asp174分别与配体的主链α-羧基和α-氨基形成离子配对相互作用,而Arg67、Thr82、Lys19和Tyr156配位配体侧链羧基。Lys19和Arg67排列成一个带正电荷的凹槽,有利于天冬氨酸而非中性天冬酰胺的结合。配体结合裂隙足够深以容纳谷氨酸。这是ABC型天冬氨酸结合蛋白的首个结构,并解释了该蛋白对天冬氨酸和谷氨酸的高亲和力以及对天冬酰胺和谷氨酰胺的弱得多的结合。停流荧光光谱表明配体结合的简单双分子机制,具有高缔合速率常数。序列比对和系统发育分析揭示了一些革兰氏阳性细菌中的PEB1a同源物。比对表明与来自大肠杆菌的已知谷氨酸和天冬氨酸结合蛋白GltI有更远的同源性,但Lys19和Tyr156在GltI中不保守。我们的结果为理解PEB1a的溶质转运和黏附素/毒力功能提供了结构基础。