Hub Jochen S, Salditt Tim, Rheinstädter Maikel C, de Groot Bert L
Computational Biomolecular Dynamics Group, Max-Planck-Institute for Biophysical Chemistry, Göttingen, Germany.
Biophys J. 2007 Nov 1;93(9):3156-68. doi: 10.1529/biophysj.107.104885. Epub 2007 Jul 13.
We present an extensive comparison of short-range order and short wavelength dynamics of a hydrated phospholipid bilayer derived by molecular dynamics simulations, elastic x-ray, and inelastic neutron scattering experiments. The quantities that are compared between simulation and experiment include static and dynamic structure factors, reciprocal space mappings, and electron density profiles. We show that the simultaneous use of molecular dynamics and diffraction data can help to extract real space properties like the area per lipid and the lipid chain ordering from experimental data. In addition, we assert that the interchain distance can be computed to high accuracy from the interchain correlation peak of the structure factor. Moreover, it is found that the position of the interchain correlation peak is not affected by the area per lipid, while its correlation length decreases linearly with the area per lipid. This finding allows us to relate a property of the structure factor quantitatively to the area per lipid. Finally, the short wavelength dynamics obtained from the simulations and from inelastic neutron scattering are analyzed and compared. The conventional interpretation in terms of the three-effective-eigenmode model is found to be only partly suitable to describe the complex fluid dynamics of lipid chains.
我们通过分子动力学模拟、弹性X射线和非弹性中子散射实验,对水合磷脂双层的短程有序和短波长动力学进行了广泛比较。模拟和实验之间比较的量包括静态和动态结构因子、倒易空间映射以及电子密度分布。我们表明,同时使用分子动力学和衍射数据有助于从实验数据中提取诸如每个脂质的面积和脂质链有序性等实空间性质。此外,我们断言,可以从结构因子的链间相关峰高精度地计算链间距离。而且,发现链间相关峰的位置不受每个脂质面积的影响,而其相关长度随每个脂质面积线性减小。这一发现使我们能够将结构因子的一个性质与每个脂质的面积定量关联起来。最后,对从模拟和非弹性中子散射获得的短波长动力学进行了分析和比较。发现基于三有效本征模模型的传统解释仅部分适用于描述脂质链的复杂流体动力学。