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基于随机扩增多态性DNA标记的欧洲白桦和白桦遗传连锁图谱

[Genetic linkage map of Betula pendula Roth and Betula platyphylla Suk based on random amplified polymorphisms DNA markers].

作者信息

Jiang Ting-Bo, Li Shao-Chen, Gao Fu-Ling, Ding Bao-Jian, Qu Yue-Jun, Tang Xin-Hua, Liu Gui-Feng, Jiang Jing, Yang Chuan-Ping

机构信息

Key Laboratory of Forest Tree Improvement and Biotechnology of Ministry of Education, Northeast Forestry University, Harbin 150040, China.

出版信息

Yi Chuan. 2007 Jul;29(7):867-73. doi: 10.1360/yc-007-0867.

DOI:10.1360/yc-007-0867
PMID:17646154
Abstract

Based on the genetic inheritance and segregation of random amplified polymorphism DNA (RAPDs) markers, the first mid-density linkage map for silver birch was constructed by using a pseudo-testcross mapping strategy. A segregating population including 80 progenies from the cross between Betula pendula Roth and B. platyphylla Suk was obtained. A set of 1,200 random oligonucleotide primers were screened, and 208 primers were selected to generate RAPD markers within a sample of 80 F1 progenies. A total of 364 segregating sites were identified. Among them, 307 belonged to 1 : 1 segregating site, and 36 belonged to 3 : 1 segregating site, others were found distorted from the normal 1 : 1 ratio. Altogether 307 sites segregating 1 : 1 (testcross configuration) were used to construct parent-specific linkage maps, 145 for B. pendula and 162 for B. platyphylla. The resulting linkage maps consisted of 145 marker sites in 14 groups (four or more sites per group), 6 triples and 6 pairs for B. pendula, which covered the map distance about 955.6 cM (Kosambi units). The average map distance between adjacent markers was 14.9 cM, and 162 linked marker site for B. platyphylla were mapped onto 15 groups (four or more sites per group), 4 triples and 6 pairs, which covered the map distance about 1,545.8 cM, and the average map distance between adjacent markers was 15.2 cM. Further study is warranted to integrate the two maps to one density map and to locate important genes on the maps.

摘要

基于随机扩增多态性DNA(RAPD)标记的遗传遗传和分离,采用拟测交作图策略构建了白桦的首张中密度连锁图谱。获得了一个分离群体,该群体包含80个来自垂枝桦(Betula pendula Roth)和白桦(B. platyphylla Suk)杂交后代。筛选了一组1200个随机寡核苷酸引物,并选择208个引物在80个F1后代样本中产生RAPD标记。共鉴定出364个分离位点。其中,307个属于1:1分离位点,36个属于3:1分离位点,其他位点偏离正常的1:1比例。总共307个呈1:1分离(测交构型)的位点用于构建亲本特异性连锁图谱,垂枝桦有145个,白桦有162个。所得的连锁图谱由垂枝桦的14组(每组四个或更多位点)中的145个标记位点、6个三联体和6个配对组成,覆盖的图谱距离约为955.6厘摩(Kosambi单位)。相邻标记之间的平均图谱距离为14.9厘摩,白桦的162个连锁标记位点被定位到15组(每组四个或更多位点)、4个三联体和6个配对上,覆盖的图谱距离约为1545.8厘摩,相邻标记之间的平均图谱距离为15.2厘摩。有必要进一步研究将这两个图谱整合为一个密度图谱,并在图谱上定位重要基因。

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