Johnson R Jeremy, Lin Shawn R, Raines Ronald T
Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706-1544, USA.
Protein Sci. 2007 Aug;16(8):1609-16. doi: 10.1110/ps.072938907.
The burial of nonpolar surface area is known to enhance markedly the conformational stability of proteins. The contribution from the burial of polar surface area is less clear. Here, we report on the tolerance to substitution of Ser75 of bovine pancreatic ribonuclease (RNase A), a residue that has the unusual attributes of being buried, conserved, and polar. To identify variants that retain biological function, we used a genetic selection based on the intrinsic cytotoxicity of ribonucleolytic activity. Cell growth at 30 degrees C, 37 degrees C, and 44 degrees C correlated with residue size, indicating that the primary attribute of Ser75 is its small size. The side-chain hydroxyl group of Ser75 forms a hydrogen bond with a main-chain nitrogen. The conformational stability of the S75A variant, which lacks this hydrogen bond, was diminished by DeltaDeltaG = 2.5 kcal/mol. Threonine, which can reinstate this hydrogen bond, provided a catalytically active RNase A variant at higher temperatures than did some smaller residues (including aspartate), indicating that a secondary attribute of Ser75 is the ability of its uncharged side chain to accept a hydrogen bond. These results provide insight on the imperatives for the conservation of a buried polar residue.
众所周知,非极性表面积的埋藏能显著增强蛋白质的构象稳定性。极性表面积埋藏的贡献则不太明确。在此,我们报告了牛胰核糖核酸酶(RNase A)的Ser75残基对取代的耐受性,该残基具有被埋藏、保守且极性的不寻常特性。为了鉴定保留生物学功能的变体,我们基于核糖核酸酶活性的内在细胞毒性进行了遗传筛选。在30℃、37℃和44℃下的细胞生长与残基大小相关,表明Ser75的主要特性是其小尺寸。Ser75的侧链羟基与主链氮形成氢键。缺乏这种氢键的S75A变体的构象稳定性降低了ΔΔG = 2.5千卡/摩尔。能够恢复这种氢键的苏氨酸在比一些较小残基(包括天冬氨酸)更高的温度下提供了一种具有催化活性的RNase A变体,表明Ser75的次要特性是其不带电侧链接受氢键的能力。这些结果为保守埋藏的极性残基的必要性提供了见解。