Amunson Krista E, Kubelka Jan
Department of Chemistry, University of Wyoming, Laramie, Wyoming 82071, USA.
J Phys Chem B. 2007 Aug 23;111(33):9993-8. doi: 10.1021/jp072454p. Epub 2007 Aug 3.
The temperature dependence of the amide I vibrational frequencies of peptides in solution was investigated. In D2O, the amide I' bands of both an alpha-helical oligopeptide, the random-coil poly(L-lysine), and the simplest amide, N-methyl acetamide (NMA), exhibit linear frequency shifts of approximately 0.07 cm(-1)/degrees C with increasing temperature. Similar amide I frequency shifts are also observed for NMA in both polar (acetonitrile and DMSO) and nonpolar (1,4-dioxane) organic solvents, thus ruling out hydrogen-bonding strength as the cause of these effects. The experimental NMA amide I frequencies in the organic solvents can be accurately described by a simple theory based on the Onsager reaction field with temperature-dependent solvent dielectric properties and a solute molecular cavity. DFT-level calculations (BPW91/cc-pVDZ) for NMA with an Onsager reaction field confirm the significant contribution of the molecular cavity to the predicted amide I frequencies. Comparison of the computations to experimental data shows that the frequency-dependent response of the reaction field, taken into account by the index of refraction, is crucial for describing the amide I frequencies in polar solvents. The poor predictions of the model for the NMA amide I band in D2O might be due, in part, to the unknown temperature dependence of the refractive index of D2O in the mid-IR range, which was approximated by the available values in the visible region.
研究了溶液中肽的酰胺I振动频率与温度的关系。在D2O中,α-螺旋寡肽、无规卷曲聚(L-赖氨酸)以及最简单的酰胺N-甲基乙酰胺(NMA)的酰胺I'带,随着温度升高均呈现出约0.07 cm⁻¹/℃的线性频率 shift。在极性(乙腈和二甲基亚砜)和非极性(1,4-二氧六环)有机溶剂中,NMA也观察到类似的酰胺I频率 shift,因此排除了氢键强度是这些效应的原因。基于具有温度依赖性溶剂介电性质和溶质分子腔的昂萨格反应场的简单理论,可以准确描述有机溶剂中实验测得的NMA酰胺I频率。使用昂萨格反应场对NMA进行DFT水平计算(BPW91/cc-pVDZ),证实了分子腔对预测的酰胺I频率有显著贡献。计算结果与实验数据的比较表明,由折射率考虑的反应场的频率依赖性响应对于描述极性溶剂中的酰胺I频率至关重要。该模型对D2O中NMA酰胺I带的预测不佳,部分原因可能是D2O在中红外范围内折射率的未知温度依赖性,这是通过可见光区域的可用值近似得到的。