• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

溶液中肽的酰胺I频率与温度的关系

On the temperature dependence of amide I frequencies of peptides in solution.

作者信息

Amunson Krista E, Kubelka Jan

机构信息

Department of Chemistry, University of Wyoming, Laramie, Wyoming 82071, USA.

出版信息

J Phys Chem B. 2007 Aug 23;111(33):9993-8. doi: 10.1021/jp072454p. Epub 2007 Aug 3.

DOI:10.1021/jp072454p
PMID:17676791
Abstract

The temperature dependence of the amide I vibrational frequencies of peptides in solution was investigated. In D2O, the amide I' bands of both an alpha-helical oligopeptide, the random-coil poly(L-lysine), and the simplest amide, N-methyl acetamide (NMA), exhibit linear frequency shifts of approximately 0.07 cm(-1)/degrees C with increasing temperature. Similar amide I frequency shifts are also observed for NMA in both polar (acetonitrile and DMSO) and nonpolar (1,4-dioxane) organic solvents, thus ruling out hydrogen-bonding strength as the cause of these effects. The experimental NMA amide I frequencies in the organic solvents can be accurately described by a simple theory based on the Onsager reaction field with temperature-dependent solvent dielectric properties and a solute molecular cavity. DFT-level calculations (BPW91/cc-pVDZ) for NMA with an Onsager reaction field confirm the significant contribution of the molecular cavity to the predicted amide I frequencies. Comparison of the computations to experimental data shows that the frequency-dependent response of the reaction field, taken into account by the index of refraction, is crucial for describing the amide I frequencies in polar solvents. The poor predictions of the model for the NMA amide I band in D2O might be due, in part, to the unknown temperature dependence of the refractive index of D2O in the mid-IR range, which was approximated by the available values in the visible region.

摘要

研究了溶液中肽的酰胺I振动频率与温度的关系。在D2O中,α-螺旋寡肽、无规卷曲聚(L-赖氨酸)以及最简单的酰胺N-甲基乙酰胺(NMA)的酰胺I'带,随着温度升高均呈现出约0.07 cm⁻¹/℃的线性频率 shift。在极性(乙腈和二甲基亚砜)和非极性(1,4-二氧六环)有机溶剂中,NMA也观察到类似的酰胺I频率 shift,因此排除了氢键强度是这些效应的原因。基于具有温度依赖性溶剂介电性质和溶质分子腔的昂萨格反应场的简单理论,可以准确描述有机溶剂中实验测得的NMA酰胺I频率。使用昂萨格反应场对NMA进行DFT水平计算(BPW91/cc-pVDZ),证实了分子腔对预测的酰胺I频率有显著贡献。计算结果与实验数据的比较表明,由折射率考虑的反应场的频率依赖性响应对于描述极性溶剂中的酰胺I频率至关重要。该模型对D2O中NMA酰胺I带的预测不佳,部分原因可能是D2O在中红外范围内折射率的未知温度依赖性,这是通过可见光区域的可用值近似得到的。

相似文献

1
On the temperature dependence of amide I frequencies of peptides in solution.溶液中肽的酰胺I频率与温度的关系
J Phys Chem B. 2007 Aug 23;111(33):9993-8. doi: 10.1021/jp072454p. Epub 2007 Aug 3.
2
Infrared and vibrational CD spectra of partially solvated alpha-helices: DFT-based simulations with explicit solvent.部分溶剂化α-螺旋的红外和振动圆二色光谱:基于密度泛函理论的显式溶剂模拟
J Phys Chem B. 2007 Feb 22;111(7):1834-45. doi: 10.1021/jp0666840. Epub 2007 Jan 26.
3
Amide I vibrational dynamics of N-methylacetamide in polar solvents: the role of electrostatic interactions.N-甲基乙酰胺在极性溶剂中的酰胺I振动动力学:静电相互作用的作用
J Phys Chem B. 2005 Jun 2;109(21):11016-26. doi: 10.1021/jp050257p.
4
Solvent effects on IR and VCD spectra of helical peptides: DFT-based static spectral simulations with explicit water.溶剂对螺旋肽红外光谱和振动圆二色光谱的影响:基于密度泛函理论的含显式水的静态光谱模拟
J Phys Chem B. 2005 Apr 28;109(16):8231-43. doi: 10.1021/jp0506078.
5
Electrostatic DFT map for the complete vibrational amide band of NMA.NMA完整振动酰胺带的静电密度泛函理论(DFT)图谱。
J Phys Chem A. 2005 Nov 3;109(43):9747-59. doi: 10.1021/jp052324l.
6
Simulations of the temperature dependence of amide I vibration.酰胺 I 振动的温度依赖性模拟。
J Phys Chem A. 2011 Jan 13;115(1):30-4. doi: 10.1021/jp1084839. Epub 2010 Dec 9.
7
Molecular mechanics force field-based map for peptide amide-I mode in solution and its application to alanine di- and tripeptides.基于分子力学力场的溶液中肽酰胺 I 模式图谱及其在丙氨酸二肽和三肽中的应用。
Phys Chem Chem Phys. 2009 Oct 28;11(40):9149-59. doi: 10.1039/b910269h. Epub 2009 Aug 5.
8
FTIR spectroscopy of alanine-based peptides: assignment of the amide I' modes for random coil and helix.基于丙氨酸的肽的傅里叶变换红外光谱:无规卷曲和螺旋结构的酰胺I'模式归属
J Struct Biol. 1995 Jan-Feb;114(1):23-7. doi: 10.1006/jsbi.1995.1002.
9
Amide I vibrational frequencies of alpha-helical peptides based upon ONIOM and density functional theory (DFT) studies.基于ONIOM和密度泛函理论(DFT)研究的α-螺旋肽的酰胺I振动频率
J Phys Chem B. 2008 Jan 31;112(4):1320-8. doi: 10.1021/jp077527j. Epub 2008 Jan 8.
10
The solvent-dependent shift of the amide I band of a fully solvated peptide as a local probe for the solvent composition in the peptide/solvent interface.完全溶剂化肽的酰胺I带的溶剂依赖性位移,作为肽/溶剂界面中溶剂组成的局部探针。
Chemphyschem. 2008 Dec 22;9(18):2742-50. doi: 10.1002/cphc.200800540.

引用本文的文献

1
Chasing weakly-bound biological water in aqueous environment near the peptide backbone by ultrafast 2D infrared spectroscopy.利用超快二维红外光谱在肽主链附近的水环境中追踪弱结合的生物水。
Commun Chem. 2024 Apr 11;7(1):82. doi: 10.1038/s42004-024-01170-x.
2
Seeking Solvation: Exploring the Role of Protein Hydration in Silk Gelation.寻求溶剂化作用:探索蛋白质水合作用在丝胶凝胶化中的作用。
Molecules. 2022 Jan 16;27(2):551. doi: 10.3390/molecules27020551.
3
Connecting the Stimuli-Responsive Rheology of Biopolymer Hydrogels to Underlying Hydrogen-Bonding Interactions.
将生物聚合物水凝胶的刺激响应流变学与潜在的氢键相互作用联系起来。
Macromolecules. 2020 Dec 8;53(23):10503-10513. doi: 10.1021/acs.macromol.0c01742. Epub 2020 Nov 18.
4
Revealing the Dynamical Role of Co-solvents in the Coupled Folding and Dimerization of Insulin.揭示共溶剂在胰岛素耦合折叠与二聚化过程中的动态作用。
J Phys Chem Lett. 2020 Jun 4;11(11):4353-4358. doi: 10.1021/acs.jpclett.0c00982. Epub 2020 May 19.
5
Molecular Structure, Chemical Exchange, and Conductivity Mechanism of High Concentration LiTFSI Electrolytes.高浓度双三氟甲烷磺酰亚胺锂电解质的分子结构、化学交换及传导机制
J Phys Chem B. 2020 Mar 12;124(10):1965-1977. doi: 10.1021/acs.jpcb.9b10795. Epub 2020 Feb 27.
6
Determination of the Solution Structure of Antifreeze Glycoproteins Using Two-Dimensional Infrared Spectroscopy.利用二维红外光谱法测定抗冻糖蛋白的溶液结构
J Phys Chem Lett. 2019 Feb 7;10(3):352-357. doi: 10.1021/acs.jpclett.8b03468. Epub 2019 Jan 10.
7
Time-resolved measurements of an ion channel conformational change driven by a membrane phase transition.时间分辨测量膜相变驱动的离子通道构象变化。
Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):10840-10845. doi: 10.1073/pnas.1708070114. Epub 2017 Sep 25.
8
Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy.从温度跃变二维红外光谱中折叠异质 β-发夹肽。
Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):2828-33. doi: 10.1073/pnas.1211968110. Epub 2013 Feb 4.
9
Development and validation of transferable amide I vibrational frequency maps for peptides.发展和验证可转移酰胺 I 振动频率图谱用于肽。
J Phys Chem B. 2011 Apr 7;115(13):3713-24. doi: 10.1021/jp200745r. Epub 2011 Mar 15.