Werner Maria, Ernberg Ingemar, Zou Jiezhi, Almqvist Jenny, Aurell Erik
Computational Biological Physics, School of Computer Science and Communication, Royal Institute of Technology, AlbaNova University Center, SE-106 91 Stockholm, Sweden.
BMC Syst Biol. 2007 Aug 31;1:40. doi: 10.1186/1752-0509-1-40.
The Epstein-Barr virus is widespread in all human populations and is strongly associated with human disease, ranging from infectious mononucleosis to cancer. In infected cells the virus can adopt several different latency programs, affecting the cells' behaviour. Experimental results indicate that a specific genetic switch between viral latency programs, reprograms human B-cells between proliferative and resting states. Each of these two latency programs makes use of a different viral promoter, Cp and Qp, respectively. The hypothesis tested in this study is that this genetic switch is controlled by both human and viral transcription factors; Oct-2 and EBNA-1. We build a physico-chemical model to investigate quantitatively the dynamical properties of the promoter regulation and experimentally examine protein level variations between the two latency programs.
Our experimental results display significant differences in EBNA-1 and Oct-2 levels between resting and proliferating programs. With the model we identify two stable latency programs, corresponding to a resting and proliferating cell. The two programs differ in robustness and transcriptional activity. The proliferating state is markedly more stable, with a very high transcriptional activity from its viral promoter. We predict the promoter activities to be mutually exclusive in the two different programs, and our relative promoter activities correlate well with experimental data. Transitions between programs can be induced, by affecting the protein levels of our transcription factors. Simulated time scales are in line with experimental results.
We show that fundamental properties of the Epstein-Barr virus involvement in latent infection, with implications for tumor biology, can be modelled and understood mathematically. We conclude that EBNA-1 and Oct-2 regulation of Cp and Qp is sufficient to establish mutually exclusive expression patterns. Moreover, the modelled genetic control predict both mono- and bistable behavior and a considerable difference in transition dynamics, based on program stability and promoter activities. Both these phenomena we hope can be further investigated experimentally, to increase the understanding of this important switch. Our results also stress the importance of the little known regulation of human transcription factor Oct-2.
爱泼斯坦-巴尔病毒在所有人类群体中广泛存在,与人类疾病密切相关,范围从传染性单核细胞增多症到癌症。在受感染的细胞中,该病毒可以采用几种不同的潜伏程序,影响细胞行为。实验结果表明,病毒潜伏程序之间的特定基因开关可使人类B细胞在增殖和静止状态之间重新编程。这两种潜伏程序分别利用不同的病毒启动子,即Cp和Qp。本研究中检验的假设是,这种基因开关受人类和病毒转录因子Oct-2和EBNA-1的共同控制。我们构建了一个物理化学模型,以定量研究启动子调控的动力学特性,并通过实验检测两种潜伏程序之间的蛋白质水平变化。
我们的实验结果显示,静止和增殖程序之间EBNA-1和Oct-2水平存在显著差异。通过该模型,我们确定了两种稳定的潜伏程序,分别对应于静止和增殖细胞。这两种程序在稳健性和转录活性方面存在差异。增殖状态明显更稳定,其病毒启动子具有非常高的转录活性。我们预测在两种不同程序中启动子活性相互排斥,并且我们的相对启动子活性与实验数据高度相关。通过影响我们转录因子的蛋白质水平,可以诱导程序之间的转变。模拟的时间尺度与实验结果一致。
我们表明,爱泼斯坦-巴尔病毒参与潜伏感染的基本特性对肿瘤生物学具有重要意义,可以通过数学建模和理解。我们得出结论,EBNA-1和Oct-2对Cp和Qp的调控足以建立相互排斥的表达模式。此外,基于程序稳定性和启动子活性,建模的基因控制预测了单稳态和双稳态行为以及转变动力学的显著差异。我们希望这两种现象都可以通过实验进一步研究,以加深对这个重要开关的理解。我们的结果还强调了鲜为人知的人类转录因子Oct-2调控的重要性。