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癌细胞吸引子内部的动力学揭示了细胞异质性、稳定性极限和逃逸现象。

Dynamics inside the cancer cell attractor reveal cell heterogeneity, limits of stability, and escape.

作者信息

Li Qin, Wennborg Anders, Aurell Erik, Dekel Erez, Zou Jie-Zhi, Xu Yuting, Huang Sui, Ernberg Ingemar

机构信息

Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, 17177 Stockholm, Sweden;

Alba Nova University Center, Royal Institute of Technology, SE-10691 Stockholm, Sweden;

出版信息

Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):2672-7. doi: 10.1073/pnas.1519210113. Epub 2016 Feb 29.

Abstract

The observed intercellular heterogeneity within a clonal cell population can be mapped as dynamical states clustered around an attractor point in gene expression space, owing to a balance between homeostatic forces and stochastic fluctuations. These dynamics have led to the cancer cell attractor conceptual model, with implications for both carcinogenesis and new therapeutic concepts. Immortalized and malignant EBV-carrying B-cell lines were used to explore this model and characterize the detailed structure of cell attractors. Any subpopulation selected from a population of cells repopulated the whole original basin of attraction within days to weeks. Cells at the basin edges were unstable and prone to apoptosis. Cells continuously changed states within their own attractor, thus driving the repopulation, as shown by fluorescent dye tracing. Perturbations of key regulatory genes induced a jump to a nearby attractor. Using the Fokker-Planck equation, this cell population behavior could be described as two virtual, opposing influences on the cells: one attracting toward the center and the other promoting diffusion in state space (noise). Transcriptome analysis suggests that these forces result from high-dimensional dynamics of the gene regulatory network. We propose that they can be generalized to all cancer cell populations and represent intrinsic behaviors of tumors, offering a previously unidentified characteristic for studying cancer.

摘要

由于稳态力和随机波动之间的平衡,在克隆细胞群体中观察到的细胞间异质性可以被映射为基因表达空间中围绕吸引子点聚集的动态状态。这些动态变化导致了癌细胞吸引子概念模型的产生,这对癌症发生和新的治疗概念都有影响。使用永生化和携带恶性EB病毒的B细胞系来探索该模型,并表征细胞吸引子的详细结构。从细胞群体中选择的任何亚群在数天到数周内重新填充了整个原始吸引域。吸引域边缘的细胞不稳定且易于凋亡。如荧光染料追踪所示,细胞在其自身的吸引子内不断改变状态,从而推动重新填充。关键调节基因的扰动会导致跳转到附近的吸引子。使用福克 - 普朗克方程,这种细胞群体行为可以被描述为对细胞的两种虚拟且相反的影响:一种是向中心吸引,另一种是促进状态空间中的扩散(噪声)。转录组分析表明,这些力源于基因调控网络的高维动态变化。我们提出,它们可以推广到所有癌细胞群体,并代表肿瘤的内在行为,为研究癌症提供了一个以前未被识别的特征。

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