Vachon Celine M, Sellers Thomas A, Carlson Erin E, Cunningham Julie M, Hilker Christopher A, Smalley Regenia L, Schaid Daniel J, Kelemen Linda E, Couch Fergus J, Pankratz V Shane
Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Cancer Res. 2007 Sep 1;67(17):8412-8. doi: 10.1158/0008-5472.CAN-07-1076.
Increased mammographic density (MD), the proportion of dense tissue visible on a mammogram, is a strong risk factor for breast cancer, common in the population and clusters in families. We conducted the first genome-wide linkage scan to identify genes influencing MD. DNA was obtained from 889 relatives (756 women, 133 men) from 89 families. Percent MD was estimated on 618 (82%) female family members using a validated computer-assisted thresholding method. The genome-wide scan included 403 microsatellite DNA markers with an average spacing of 9 cM. Fine mapping of a region of chromosome 5p (5p13.1-5p15.1) was done using 21 additional closely spaced DNA markers. Linkage analyses were conducted to quantify the evidence for a gene responsible for MD across the genome. The maximum log odds for linkage (LOD) score from the genome-wide scan was on chromosome 5p (LOD = 2.9, supporting linkage by a factor of 10(2.9) or 794 to 1) with a 1-LOD interval spanning 28.6 cM. Two suggestive regions for linkage were also identified on chromosome 12 (LOD = 2.6, 1-LOD interval of 14.8 cM; and LOD = 2.5, 1-LOD interval of 17.2 cM). Finer mapping of the region surrounding the maximum LOD on chromosome 5p resulted in stronger and statistically significant evidence for linkage (LOD = 4.2) and a narrowed 1-LOD interval (13.4 cM). The putative locus on chromosome 5p is likely to account for up to 22% of variation in MD. Hence, 1 or more of the 45 candidate genes in this region could explain a large proportion of MD and, potentially, breast cancer.
乳腺钼靶密度(MD)增加,即乳腺钼靶片上可见的致密组织比例,是乳腺癌的一个强风险因素,在人群中常见且在家族中聚集。我们进行了首次全基因组连锁扫描以识别影响MD的基因。从89个家庭的889名亲属(756名女性,133名男性)获取了DNA。使用经过验证的计算机辅助阈值法对618名(82%)女性家庭成员的MD百分比进行了估计。全基因组扫描包括403个微卫星DNA标记,平均间距为9厘摩(cM)。使用另外21个紧密间隔的DNA标记对5号染色体p臂区域(5p13.1 - 5p15.1)进行了精细定位。进行连锁分析以量化全基因组中负责MD的基因的证据。全基因组扫描的最大连锁对数(LOD)分数位于5号染色体p臂(LOD = 2.9,支持连锁的系数为10(2.9) 或794比1),1 - LOD区间跨度为28.6 cM。在12号染色体上还确定了两个提示性连锁区域(LOD = 2.6,1 - LOD区间为14.8 cM;以及LOD = 2.5,1 - LOD区间为17.2 cM)。对5号染色体p臂上最大LOD周围区域的更精细定位产生了更强且具有统计学意义的连锁证据(LOD = 4.2)以及更窄的1 - LOD区间(13.4 cM)。5号染色体p臂上的推定基因座可能占MD变异的22%。因此,该区域的45个候选基因中的一个或多个可能解释很大一部分MD,甚至可能解释乳腺癌。