Kropinski Andrew M, Kovalyova Irina V, Billington Stephen J, Patrick Aaron N, Butts Brent D, Guichard Jared A, Pitcher Trevor J, Guthrie Carly C, Sydlaske Anya D, Barnhill Lisa M, Havens Kyle A, Day Kenneth R, Falk Darrel R, McConnell Michael R
Department of Microbiology and Immunology, Queens University, Kingston, Ontario, Canada K7L 3N6.
Virology. 2007 Dec 20;369(2):234-44. doi: 10.1016/j.virol.2007.07.027. Epub 2007 Sep 7.
The genome sequence of the Salmonella enterica serovar Anatum-specific, serotype-converting bacteriophage epsilon15 has been completed. The nonredundant genome contains 39,671 bp and 51 putative genes. It most closely resembles the genome of phiV10, an Escherichia coli O157:H7-specific temperate phage, with which it shares 36 related genes. More distant relatives include the Burkholderia cepacia-specific phage, BcepC6B (8 similar genes), the Bordetella bronchiseptica-specific phage, BPP-1 (8 similar genes) and the Photobacterium profundum prophage, P Pphipr1 (6 similar genes). epsilon15 gene identifications based on homologies with known gene families include the terminase small and large subunits, integrase, endolysin, two holins, two DNA methylase enzymes (one adenine-specific and one cytosine-specific) and a RecT-like enzyme. Genes identified experimentally include those coding for the serotype conversion proteins, the tail fiber, the major capsid protein and the major repressor. epsilon15's attP site and the Salmonella attB site with which it interacts during lysogenization have also been determined.
肠炎沙门氏菌安纳托姆血清型特异性血清型转换噬菌体ε15的基因组序列已完成测定。该非冗余基因组包含39,671个碱基对和51个推定基因。它与大肠杆菌O157:H7特异性温和噬菌体phiV10的基因组最为相似,二者共有36个相关基因。亲缘关系较远的噬菌体包括洋葱伯克霍尔德氏菌特异性噬菌体BcepC6B(8个相似基因)、支气管败血波氏杆菌特异性噬菌体BPP-1(8个相似基因)和深海发光杆菌原噬菌体P Pphipr1(6个相似基因)。基于与已知基因家族的同源性对ε15基因进行的鉴定包括末端酶小亚基和大亚基、整合酶、溶菌酶、两种孔蛋白、两种DNA甲基化酶(一种腺嘌呤特异性和一种胞嘧啶特异性)以及一种RecT样酶。通过实验鉴定的基因包括编码血清型转换蛋白、尾丝、主要衣壳蛋白和主要阻遏物的基因。还确定了ε15的附着位点attP以及它在溶源化过程中与之相互作用的沙门氏菌附着位点attB。