Burghardt Thomas P, Hu Jimmy Yan, Ajtai Katalin
Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Biophys Chem. 2007 Dec;131(1-3):15-28. doi: 10.1016/j.bpc.2007.08.008. Epub 2007 Sep 11.
Myosin is a motor protein associating with actin and ATP. It translates along actin filaments against a force by transduction of free energy liberated with ATP hydrolysis. Various myosin crystal structures define time points during ATPase showing the protein undergoes large conformation change during transduction over a cycle with approximately 10 ms periodicity. The protein conformation trajectory between two intermediates in the cycle is surmised by non-equilibrium Monte Carlo simulation utilizing free-energy minimization. The trajectory shows myosin transduction of free energy to mechanical work giving evidence for: (i) a causal relationship between product release and work production in the native isoform that is correctly disrupted in a chemically modified protein, (ii) the molecular basis of ATP-sensitive tryptophan fluorescence enhancement and acrylamide quenching, (iii) an actin-binding site peptide containing the free-energy barrier to ATPase product release defining the rate limiting step and, (iv) a scenario for actin-activation of myosin ATPase.
肌球蛋白是一种与肌动蛋白和ATP相关的驱动蛋白。它通过ATP水解释放的自由能转导,逆着一种力沿着肌动蛋白丝移动。各种肌球蛋白晶体结构定义了ATP酶作用过程中的时间点,显示该蛋白质在一个周期的转导过程中经历了大约10毫秒周期性的大构象变化。利用自由能最小化的非平衡蒙特卡罗模拟推测了该周期中两个中间体之间的蛋白质构象轨迹。该轨迹显示了肌球蛋白将自由能转导为机械功,为以下方面提供了证据:(i)天然同工型中产物释放与功产生之间的因果关系,在化学修饰的蛋白质中这种关系被正确破坏;(ii)ATP敏感的色氨酸荧光增强和丙烯酰胺淬灭的分子基础;(iii)一个含有ATP酶产物释放自由能屏障的肌动蛋白结合位点肽,定义了限速步骤;以及(iv)肌球蛋白ATP酶的肌动蛋白激活机制。