Zhu Xiaofeng, Robinson David A, McEwan Andrew R, O'Hagan David, Naismith James H
Center for Biomolecular Sciences, University of St. Andrews, St. Andrews, KY16 9ST, United Kingdom.
J Am Chem Soc. 2007 Nov 28;129(47):14597-604. doi: 10.1021/ja0731569. Epub 2007 Nov 7.
Recently a fluorination enzyme was identified and isolated from Streptomyces cattleya, as the first committed step on the metabolic pathway to the fluorinated metabolites, fluoroacetate and 4-fluorothreonine. This enzyme, 5'-fluoro-5'-deoxy adenosine synthetase (FDAS), has been shown to catalyze C-F bond formation by nucleophilic attack of fluoride ion to S-adenosyl-l-methionine (SAM) with the concomitant displacement of l-methionine to generate 5'-fluoro-5'-deoxy adenosine (5'-FDA). Although the structures of FDAS bound to both SAM and products have been solved, the molecular mechanism remained to be elucidated. We now report site-directed mutagenesis studies, structural analyses, and isothermal calorimetry (ITC) experiments. The data establish the key residues required for catalysis and the order of substrate binding. Fluoride ion is not readily distinguished from water by protein X-ray crystallography; however, using chloride ion (also a substrate) with a mutant of low activity has enabled the halide ion to be located in nonproductive co-complexes with SAH and SAM. The kinetic data suggest the positively charged sulfur of SAM is a key requirement in stabilizing the transition state. We propose a molecular mechanism for FDAS in which fluoride weakly associates with the enzyme exchanging two water molecules for protein ligation. The binding of SAM expels remaining water associated with fluoride ion and traps the ion in a pocket positioned to react with SAM, generating l-methionine and 5'-FDA. l-methionine then dissociates from the enzyme followed by 5'-FDA.
最近,一种氟化酶从卡特利链霉菌中被鉴定并分离出来,它是通向氟化代谢产物氟乙酸盐和4-氟苏氨酸代谢途径中的首个关键步骤。这种酶,即5'-氟-5'-脱氧腺苷合成酶(FDAS),已被证明可通过氟离子对S-腺苷-L-甲硫氨酸(SAM)的亲核攻击来催化碳-氟键的形成,同时L-甲硫氨酸被取代以生成5'-氟-5'-脱氧腺苷(5'-FDA)。尽管已解析出与SAM和产物结合的FDAS的结构,但分子机制仍有待阐明。我们现在报告定点诱变研究、结构分析和等温滴定量热法(ITC)实验。这些数据确定了催化所需的关键残基以及底物结合的顺序。通过蛋白质X射线晶体学很难区分氟离子和水;然而,使用氯离子(也是一种底物)与低活性突变体相结合,已能够在与SAH和SAM形成的非生产性共复合物中定位卤离子。动力学数据表明,SAM带正电荷的硫是稳定过渡态的关键条件。我们提出了一种FDAS的分子机制,其中氟化物与酶弱结合,用两个水分子交换蛋白质连接。SAM的结合排出与氟离子相关的剩余水,并将离子捕获在一个位置合适的口袋中,使其与SAM反应,生成L-甲硫氨酸和5'-FDA。然后L-甲硫氨酸从酶上解离,接着是5'-FDA。