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用于涉及分子插入和缺失模拟的优化扩展系综。II. 开放系统。

Optimized expanded ensembles for simulations involving molecular insertions and deletions. II. Open systems.

作者信息

Escobedo Fernando A

机构信息

School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, USA.

出版信息

J Chem Phys. 2007 Nov 7;127(17):174104. doi: 10.1063/1.2800321.

DOI:10.1063/1.2800321
PMID:17994804
Abstract

In the Grand Canonical, osmotic, and Gibbs ensembles, chemical potential equilibrium is attained via transfers of molecules between the system and either a reservoir or another subsystem. In this work, the expanded ensemble (EXE) methods described in part I [F. A. Escobedo and F. J. Martinez-Veracoechea, J. Chem. Phys. 127, 174103 (2007)] of this series are extended to these ensembles to overcome the difficulties associated with implementing such whole-molecule transfers. In EXE, such moves occur via a target molecule that undergoes transitions through a number of intermediate coupling states. To minimize the tunneling time between the fully coupled and fully decoupled states, the intermediate states could be either: (i) sampled with an optimal frequency distribution (the sampling problem) or (ii) selected with an optimal spacing distribution (staging problem). The sampling issue is addressed by determining the biasing weights that would allow generating an optimal ensemble; discretized versions of this algorithm (well suited for small number of coupling stages) are also presented. The staging problem is addressed by selecting the intermediate stages in such a way that a flat histogram is the optimized ensemble. The validity of the advocated methods is demonstrated by their application to two model problems, the solvation of large hard spheres into a fluid of small and large spheres, and the vapor-liquid equilibrium of a chain system.

摘要

在正则系综、渗透系综和吉布斯系综中,化学势平衡是通过分子在系统与一个储库或另一个子系统之间的转移来实现的。在本工作中,本系列第一部分[F. A. 埃斯科韦多和F. J. 马丁内斯 - 韦拉科埃切亚,《化学物理杂志》127, 174103 (2007)]中描述的扩展系综(EXE)方法被扩展到这些系综,以克服与实施这种全分子转移相关的困难。在EXE中,此类移动通过一个目标分子进行,该目标分子通过多个中间耦合态发生转变。为了最小化完全耦合态和完全解耦态之间的隧穿时间,中间态可以是:(i) 以最优频率分布进行采样(采样问题)或 (ii) 以最优间距分布进行选择(分级问题)。通过确定能够生成最优系综的偏置权重来解决采样问题;还给出了该算法的离散版本(非常适合少量耦合阶段)。通过以扁平直方图为优化系综的方式选择中间阶段来解决分级问题。通过将所倡导的方法应用于两个模型问题,即大硬球在大小球体流体中的溶剂化以及链系统的气 - 液平衡,证明了这些方法的有效性。

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