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用于涉及分子插入和缺失模拟的优化扩展系综。I. 封闭系统。

Optimized expanded ensembles for simulations involving molecular insertions and deletions. I. Closed systems.

作者信息

Escobedo Fernando A, Martínez-Veracoechea Francisco J

机构信息

School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, USA.

出版信息

J Chem Phys. 2007 Nov 7;127(17):174103. doi: 10.1063/1.2800320.

DOI:10.1063/1.2800320
PMID:17994803
Abstract

Monte Carlo simulation methods that involve the insertion-deletion of molecules are of wide spread use for the study of thermophysical behavior of complex systems; e.g., for the estimation of chemical potentials in closed-system ensembles. In this work, efficient expanded ensemble methods are described to overcome the lack of ergodicity that often plagues such molecular moves, wherein an arbitrary physical parameter Lambda is used to gradually couple and decouple a partial molecule to and from the system. In particular, we describe the use of (1) acceptance ratio methods for the robust estimation of free-energy changes associated with transitions between Lambda states of the partial molecule, (2) non-Boltzmann sampling of the probability density of Lambda states so that one can achieve either a flat histogram or an optimized histogram based on the maximization of round trips between the Lambda bounds, and (3) an approach to select suitable intermediate stages of the Lambda parameter that maximizes such round trips. The validity of the advocated methods is demonstrated by their application to two model systems, namely, the solvation of large hard spheres into a fluid of small spheres, and the mesophase formation of a block copolymer-homopolymer mixture.

摘要

涉及分子插入-删除的蒙特卡罗模拟方法在研究复杂系统的热物理行为中广泛应用;例如,用于估计封闭系统系综中的化学势。在这项工作中,描述了有效的扩展系综方法以克服常常困扰此类分子移动的遍历性缺乏问题,其中使用一个任意物理参数Λ来逐渐将部分分子与系统耦合和解耦。特别地,我们描述了以下方法的使用:(1) 接受率方法,用于稳健估计与部分分子Λ态之间跃迁相关的自由能变化;(2) Λ态概率密度的非玻尔兹曼采样,以便基于Λ边界之间往返次数的最大化实现平坦直方图或优化直方图;(3) 一种选择Λ参数合适中间阶段的方法,以使此类往返次数最大化。通过将所倡导的方法应用于两个模型系统,即大硬球在小球流体中的溶剂化以及嵌段共聚物-均聚物混合物的中间相形成,证明了这些方法的有效性。

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