秀丽隐杆线虫非编码RNA基因。
C. elegans noncoding RNA genes.
作者信息
Stricklin Shawn L, Griffiths-Jones Sam, Eddy Sean R
机构信息
Howard Hughes Medical Institute and Department of Genetics, Washington University, St. Louis, MO 63108, USA.
出版信息
WormBook. 2005 Jun 25:1-7. doi: 10.1895/wormbook.1.1.1.
Abstract
The C. elegans genome contains approximately 1300 genes that produce functional noncoding RNA (ncRNA) transcripts. Here we describe what is currently known about these ncRNA genes, from the perspective of the annotation of the finished genome sequence. We have collated a reference set of C. elegans ncRNA gene annotation relative to the WS130 version of the genome assembly, and made these data available in several formats.
摘要
秀丽隐杆线虫基因组包含大约1300个产生功能性非编码RNA（ncRNA）转录本的基因。在此，我们从已完成的基因组序列注释的角度描述目前对这些ncRNA基因的了解。我们整理了一套相对于基因组组装版本WS130的秀丽隐杆线虫ncRNA基因注释参考集，并以多种格式提供这些数据。
相似文献
1
C. elegans noncoding RNA genes.秀丽隐杆线虫非编码RNA基因。
WormBook. 2005 Jun 25:1-7. doi: 10.1895/wormbook.1.1.1.
2
An extensive class of small RNAs in Caenorhabditis elegans.秀丽隐杆线虫中一类广泛的小RNA。
Science. 2001 Oct 26;294(5543):862-4. doi: 10.1126/science.1065329.
3
Microarray analysis of ncRNA expression patterns in Caenorhabditis elegans after RNAi against snoRNA associated proteins.针对与小核仁RNA相关蛋白进行RNA干扰后，秀丽隐杆线虫中非编码RNA表达模式的微阵列分析。
BMC Genomics. 2008 Jun 11;9:278. doi: 10.1186/1471-2164-9-278.
4
Genetics. Revealing the dark matter of the genome.遗传学。揭示基因组的暗物质。
Science. 2010 Dec 24;330(6012):1758-9. doi: 10.1126/science.1200700. Epub 2010 Dec 22.
5
Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.利用全基因组平铺式微阵列绘制秀丽隐杆线虫非编码转录组图谱。
Genome Res. 2007 Oct;17(10):1471-7. doi: 10.1101/gr.6611807. Epub 2007 Sep 4.
6
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans.一类在秀丽隐杆线虫中可能具有调控作用的丰富的微小RNA。
Science. 2001 Oct 26;294(5543):858-62. doi: 10.1126/science.1065062.
7
A small fortune.一笔小财富。
Nat Rev Mol Cell Biol. 2001 Dec;2(12):867. doi: 10.1038/35103036.
8
Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.秀丽隐杆线虫和briggsae秀丽隐杆线虫基因组中结构化非编码RNA的预测。
J Exp Zool B Mol Dev Evol. 2006 Jul 15;306(4):379-92. doi: 10.1002/jez.b.21086.
9
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.秀丽隐杆线虫小非编码转录组的组织：基因组特征、生物发生及表达
Genome Res. 2006 Jan;16(1):20-9. doi: 10.1101/gr.4139206. Epub 2005 Dec 12.
10
The microRNAs of Caenorhabditis elegans.秀丽隐杆线虫的微小RNA
Genes Dev. 2003 Apr 15;17(8):991-1008. doi: 10.1101/gad.1074403. Epub 2003 Apr 2.
引用本文的文献
1
Benchmarking datasets for assembly-based variant calling using high-fidelity long reads.基于高保真长读长的组装变异调用基准数据集。
BMC Genomics. 2023 Mar 27;24(1):148. doi: 10.1186/s12864-023-09255-y.
2
Nematode chromosomes.线虫染色体。
Genetics. 2022 May 5;221(1). doi: 10.1093/genetics/iyac014.
3
microRNAs and Their Roles in Plant Development.微小RNA及其在植物发育中的作用。
Front Plant Sci. 2022 Feb 18;13:824240. doi: 10.3389/fpls.2022.824240. eCollection 2022.
4
Long-read sequencing and de novo genome assemblies reveal complex chromosome end structures caused by telomere dysfunction at the single nucleotide level.长读测序和从头基因组组装揭示了复杂的染色体末端结构，这些结构是由单个核苷酸水平上的端粒功能障碍引起的。
Nucleic Acids Res. 2021 Apr 6;49(6):3338-3353. doi: 10.1093/nar/gkab141.
5
Single-cell RNA profiling links ncRNAs to spatiotemporal gene expression during C. elegans embryogenesis.单细胞 RNA 谱分析将 ncRNAs 与秀丽隐杆线虫胚胎发生过程中的时空基因表达联系起来。
Sci Rep. 2020 Nov 2;10(1):18863. doi: 10.1038/s41598-020-75801-3.
6
SLFinder, a pipeline for the novel identification of splice-leader sequences: a good enough solution for a complex problem.SLFinder，一种用于新的剪接供体序列鉴定的流水线：解决复杂问题的一个足够好的方案。
BMC Bioinformatics. 2020 Jul 8;21(1):293. doi: 10.1186/s12859-020-03610-6.
7
Transcription-independent TFIIIC-bound sites cluster near heterochromatin boundaries within lamina-associated domains in C. elegans.转录因子 IIIIC 结合位点在秀丽隐杆线虫的核纤层相关域内异染色质边界附近聚集，且不依赖于转录。
Epigenetics Chromatin. 2020 Jan 9;13(1):1. doi: 10.1186/s13072-019-0325-2.
8
Recompleting the genome.重测序基因组
Genome Res. 2019 Jun;29(6):1009-1022. doi: 10.1101/gr.244830.118. Epub 2019 May 23.
9
An Emerging Role of micro-RNA in the Effect of the Endocrine Disruptors.微小RNA在内分泌干扰物作用中的新作用
Front Neurosci. 2016 Jun 30;10:318. doi: 10.3389/fnins.2016.00318. eCollection 2016.
10
Comprehensive analysis of mutually exclusive alternative splicing in C. elegans.秀丽隐杆线虫中互斥可变剪接的综合分析。
Worm. 2014 Mar 31;3:e28459. doi: 10.4161/worm.28459. eCollection 2014.
Zotero 插件