BAGET：一个用于轻松检索原核生物基因上下文和序列的网络服务器。
BAGET: a web server for the effortless retrieval of prokaryotic gene context and sequence.
作者信息
Oberto Jacques
机构信息
Biologie Moléculaire du Gène chez les Extrêmophiles, Université Paris-Sud, Institut de Génétique et Microbiologie, CNRS UMR8621, 91405 Orsay Cedex, France.
出版信息
Bioinformatics. 2008 Feb 1;24(3):424-5. doi: 10.1093/bioinformatics/btm600. Epub 2007 Dec 1.
UNLABELLED
BAGET (Bacterial and Archaeal Gene Exploration Tool) is a web service designed to facilitate extraction, by molecular geneticists and phylogeneticists, of specific gene and protein sequences from completely determined prokaryotic genomes. Upon selection of a particular prokaryotic organism and gene, two levels of visual gene context information are provided on a single dynamic page: (i) a graphical representation of a user defined portion of the chromosome centered on the gene of interest and (ii) the DNA sequence of the query gene, of the immediate neighboring genes and the intergenic regions each identified by a consistent color code. The aminoacid sequence is provided for protein-coding query genes. Query results can be exported as a rich text format (RTF) word processor file for printing, archival or further analysis.
AVAILABILITY
未标注
BAGET（细菌和古菌基因探索工具）是一种网络服务，旨在方便分子遗传学家和系统发育学家从完全确定的原核生物基因组中提取特定的基因和蛋白质序列。在选择特定的原核生物和基因后，会在单个动态页面上提供两级可视化基因上下文信息：（i）以感兴趣的基因为中心的用户定义染色体部分的图形表示，以及（ii）查询基因、紧邻基因和基因间区域的DNA序列，每个序列都由一致的颜色代码标识。为蛋白质编码查询基因提供氨基酸序列。查询结果可以导出为富文本格式（RTF）文字处理器文件，用于打印、存档或进一步分析。
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