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本文引用的文献
1
Using the tools and resources of the RCSB protein data bank.
Curr Protoc Bioinformatics. 2007 Dec;Chapter 1:1.9.1-1.9.24. doi: 10.1002/0471250953.bi0109s20.
2
The Universal Protein Resource (UniProt).
Nucleic Acids Res. 2007 Jan;35(Database issue):D193-7. doi: 10.1093/nar/gkl929. Epub 2006 Nov 16.
3
The Blue Obelisk-interoperability in chemical informatics.
J Chem Inf Model. 2006 May-Jun;46(3):991-8. doi: 10.1021/ci050400b.
4
The backrub motion: how protein backbone shrugs when a sidechain dances.
Structure. 2006 Feb;14(2):265-74. doi: 10.1016/j.str.2005.10.007.
5
VIPERdb: a relational database for structural virology.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D386-9. doi: 10.1093/nar/gkj032.
6
The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications.
BMC Bioinformatics. 2005 Feb 6;6:21. doi: 10.1186/1471-2105-6-21.
7
E-MSD: an integrated data resource for bioinformatics.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D262-5. doi: 10.1093/nar/gki058.
8
The Uppsala Electron-Density Server.
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2240-9. doi: 10.1107/S0907444904013253. Epub 2004 Nov 26.
9
PDBML: the representation of archival macromolecular structure data in XML.
Bioinformatics. 2005 Apr 1;21(7):988-92. doi: 10.1093/bioinformatics/bti082. Epub 2004 Oct 27.
10
pdb-care (PDB carbohydrate residue check): a program to support annotation of complex carbohydrate structures in PDB files.
BMC Bioinformatics. 2004 Jun 4;5:69. doi: 10.1186/1471-2105-5-69.
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