Wang Jianping, Zhuang Wei, Mukamel Shaul, Hochstrasser Robin
Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 9104-6323, USA.
J Phys Chem B. 2008 May 15;112(19):5930-7. doi: 10.1021/jp075683k. Epub 2007 Dec 14.
The linear IR and two-dimensional (2D) IR spectra of the amide-I modes of the 12-residue beta-hairpin peptide tryptophan zipper-2 (SWTWENGKWTWK) and its two 13C isotopomers were simulated, with local mode frequencies evaluated by two solution-phase peptide amide-I frequency maps proposed recently: an electrostatic potential map and an electrostatic field map. Both maps predict a set of nondegenerate local amide-I mode transition energies for the hairpin. Spectral simulations using both maps predict the main spectral features of the linear IR and 2D IR experimental results of the (13)C-labeled and -unlabeled hairpin. The radial distribution functions obtained using trajectories from classical molecular dynamics simulations demonstrate different water distributions at different sites of the hairpin. Our results suggest that the observed difference of the (13)C-shifted band, including its peak position and frequency distributions for different isotopomers, in both linear IR and 2D IR spectra, is likely to be due to the difference in the local environment of the solvated peptide. Ab initio density functional theory calculations show a residue-independent (13)C shift of the amide-I mode, further supporting the result. The variations of these shifts are attributed to the residue level heterogeneity of the electrostatic environment of the peptide. Our results show that 2D IR of peptide with single (13)C isotopic labeling can be used to probe the electrostatic environment of the peptide local structure.
模拟了12个残基的β-发夹肽色氨酸拉链-2(SWTWENGKWTWK)及其两种13C同位素异构体的酰胺-I模式的线性红外光谱和二维(2D)红外光谱,通过最近提出的两个溶液相肽酰胺-I频率图来评估局部模式频率:静电势图和静电场图。这两个图都预测了发夹的一组非简并局部酰胺-I模式跃迁能量。使用这两个图进行的光谱模拟预测了(13)C标记和未标记发夹的线性红外和二维红外实验结果的主要光谱特征。使用经典分子动力学模拟轨迹获得的径向分布函数表明,发夹不同位点的水分布不同。我们的结果表明,在线性红外光谱和二维红外光谱中观察到的(13)C位移带的差异,包括其峰位置和不同同位素异构体的频率分布,可能是由于溶剂化肽局部环境的差异。从头算密度泛函理论计算表明酰胺-I模式的(13)C位移与残基无关,进一步支持了这一结果。这些位移的变化归因于肽静电环境的残基水平异质性。我们的结果表明,具有单一(13)C同位素标记的肽的二维红外光谱可用于探测肽局部结构的静电环境。