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瞄准鸟枪法磷酸化蛋白质组学。

Taking aim at shotgun phosphoproteomics.

作者信息

Hoffert Jason D, Knepper Mark A

机构信息

Laboratory of Kidney and Electrolyte Metabolism, National Heart, Lung, and Blood Institute, Bethesda, MD 20892, USA.

出版信息

Anal Biochem. 2008 Apr 1;375(1):1-10. doi: 10.1016/j.ab.2007.11.023. Epub 2007 Nov 22.

DOI:10.1016/j.ab.2007.11.023
PMID:18078798
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2408551/
Abstract

Shotgun phosphoproteomics employs liquid chromatography-coupled tandem mass spectrometry (LC-MS/MS) to analyze phosphopeptides from complex protein mixtures, allowing detection and quantification of phosphorylation events on a global scale. Within the past few years, this powerful technique has been used to uncover novel phosphorylation sites as well as explore changes in protein phosphorylation during cellular signaling in various systems. This review presents a general overview of current phosphoproteomic methodologies, including summaries of various approaches to phosphopeptide enrichment, alternative MS fragmentation strategies, and the latest software for analysis of phosphopeptide data sets.

摘要

鸟枪法磷酸化蛋白质组学采用液相色谱-串联质谱联用技术(LC-MS/MS)分析复杂蛋白质混合物中的磷酸化肽段,从而能够在全球范围内检测和定量磷酸化事件。在过去几年中,这项强大的技术已被用于发现新的磷酸化位点,并探索各种系统中细胞信号传导过程中蛋白质磷酸化的变化。本综述概述了当前的磷酸化蛋白质组学方法,包括各种磷酸化肽段富集方法、替代质谱裂解策略以及用于分析磷酸化肽段数据集的最新软件的总结。

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本文引用的文献

1
Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.无标记液相色谱-质谱实验中蛋白质相对定量的计算方法
Brief Bioinform. 2008 Mar;9(2):156-65. doi: 10.1093/bib/bbm046. Epub 2007 Sep 28.
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The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics.质量精度、数据采集速度和搜索算法选择对磷酸蛋白质组学中肽段鉴定率的影响。
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Investigating MS2/MS3 matching statistics: a model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence.研究MS2/MS3匹配统计:一种用于耦合连续阶段质谱数据以提高肽段鉴定可信度的模型。
Mol Cell Proteomics. 2008 Jan;7(1):71-87. doi: 10.1074/mcp.M700128-MCP200. Epub 2007 Sep 13.
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An automated platform for analysis of phosphoproteomic datasets: application to kidney collecting duct phosphoproteins.用于分析磷酸化蛋白质组数据集的自动化平台:在肾集合管磷酸化蛋白质中的应用
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Neutral loss-based phosphopeptide recognition: a collection of caveats.基于中性丢失的磷酸肽识别:一系列注意事项
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Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy.使用目标-诱饵搜索策略对串联质谱搜索算法进行比较评估。
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Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.在混合线性离子阱-轨道阱质谱仪上实现电子转移解离
Anal Chem. 2007 May 15;79(10):3525-34. doi: 10.1021/ac070020k. Epub 2007 Apr 19.
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Protein identification by spectral networks analysis.通过光谱网络分析进行蛋白质鉴定。
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Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks.用于细胞信号网络的稳健定量蛋白质组学分析的多反应监测
Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5860-5. doi: 10.1073/pnas.0608638104. Epub 2007 Mar 26.
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An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.一种用于(定量)磷酸化蛋白质组学的化学、质谱和计算综合策略:应用于黑腹果蝇Kc167细胞。
Mol Biosyst. 2007 Apr;3(4):275-86. doi: 10.1039/b617545g. Epub 2007 Feb 19.