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对通过冷冻负染色制备的GroEL进行高分辨率单颗粒三维分析。

High-resolution single-particle 3D analysis on GroEL prepared by cryo-negative staining.

作者信息

De Carlo Sacha, Boisset Nicolas, Hoenger Andreas

机构信息

Molecular, Cellular and Developmental Biology Department, Campus Box 347, University of Colorado at Boulder, Boulder, CO 80309-0347, USA.

出版信息

Micron. 2008 Oct;39(7):934-43. doi: 10.1016/j.micron.2007.11.003. Epub 2007 Nov 17.

DOI:10.1016/j.micron.2007.11.003
PMID:18083582
Abstract

Cryo-negative staining was developed as a complementary technique to conventional cryo-electron microscopy on supramolecular complexes. It allows imaging biological samples in a comparable state of structural preservation to conventional cryo-EM but the staining produces better contrast in accessible areas and allows data recording at lower defocus values. Cryo-negative staining vitrifies biological particles in the presence of a concentrated ammonium molybdate solution at neutral pH. It was successfully used to study the structure and dynamics of several macromolecules, such as human transcription factors and RNA polymerases. Imaging macromolecular complexes with cryo-negative staining has been established previously to better than 2 nm detail. However, it has not been verified so far whether cryo-negative staining also visualizes secondary structure elements. Using the well known E. coli GroEL chaperonin, we could show that the structure is well preserved to approximately 10 A resolution. Secondary structure details are at least partially resolved in the electron density map.

摘要

冷冻负染色技术是作为超分子复合物常规冷冻电子显微镜的一种补充技术而开发的。它能使生物样品在结构保存状态上与传统冷冻电镜相当,但染色在可及区域产生更好的对比度,并允许在较低的散焦值下进行数据记录。冷冻负染色在中性pH值的浓钼酸铵溶液存在下使生物颗粒玻璃化。它已成功用于研究几种大分子的结构和动力学,如人类转录因子和RNA聚合酶。此前已利用冷冻负染色对大分子复合物进行成像,分辨率优于2纳米。然而,到目前为止,尚未证实冷冻负染色是否也能显示二级结构元件。利用著名的大肠杆菌GroEL伴侣蛋白,我们可以证明其结构在约10埃分辨率下保存良好。二级结构细节在电子密度图中至少部分得到解析。

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High-resolution single-particle 3D analysis on GroEL prepared by cryo-negative staining.对通过冷冻负染色制备的GroEL进行高分辨率单颗粒三维分析。
Micron. 2008 Oct;39(7):934-43. doi: 10.1016/j.micron.2007.11.003. Epub 2007 Nov 17.
2
The 13 angstroms structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy.通过冷冻电子显微镜获得的伴侣蛋白GroEL-蛋白质底物复合物的13埃结构。
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Seeing GroEL at 6 A resolution by single particle electron cryomicroscopy.通过单颗粒电子冷冻显微镜以6埃分辨率观察到伴侣蛋白GroEL。
Structure. 2004 Jul;12(7):1129-36. doi: 10.1016/j.str.2004.05.006.
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Cryonegative staining of macromolecular assemblies.大分子组装体的冷冻负染色
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Cryo-negative staining.冷冻负染色
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Structures of unliganded and ATP-bound states of the Escherichia coli chaperonin GroEL by cryoelectron microscopy.通过冷冻电子显微镜观察大肠杆菌伴侣蛋白GroEL未结合配体和结合ATP状态的结构。
J Struct Biol. 2001 Aug;135(2):115-25. doi: 10.1006/jsbi.2001.4374.
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Classification and reconstruction of a heterogeneous set of electron microscopic images: a case study of GroEL-substrate complexes.一组异质电子显微镜图像的分类与重建:以GroEL-底物复合物为例的研究
J Struct Biol. 2001 Feb-Mar;133(2-3):203-13. doi: 10.1006/jsbi.2001.4354.
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Cryo-EM structure of the native GroEL-GroES complex from thermus thermophilus encapsulating substrate inside the cavity.嗜热栖热菌天然GroEL - GroES复合物的冷冻电镜结构,其在腔内包裹着底物。
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Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.对284742个GroEL颗粒进行自动冷冻电镜数据采集与分析。
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EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps.EMatch:在中等分辨率冷冻电镜图谱中发现蛋白质结构域的高分辨率结构同源物。
IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):28-39. doi: 10.1109/TCBB.2007.1003.

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