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关于HIV-1逆转录酶75位缬氨酸在DNA合成的错误插入和错配延伸保真度中作用的机制性见解。

Mechanistic insights into the role of Val75 of HIV-1 reverse transcriptase in misinsertion and mispair extension fidelity of DNA synthesis.

作者信息

Matamoros Tania, Kim Baek, Menéndez-Arias Luis

机构信息

Centro de Biología Molecular Severo Ochoa, Consejo Superior de Investigaciones Científicas, Universidad Autónoma de Madrid, 28049 Madrid, Spain.

出版信息

J Mol Biol. 2008 Feb 1;375(5):1234-48. doi: 10.1016/j.jmb.2007.11.021. Epub 2007 Nov 17.

DOI:10.1016/j.jmb.2007.11.021
PMID:18155043
Abstract

The side chain of Val75 stabilizes the fingers subdomain of the human immunodeficiency virus type 1 reverse transcriptase (RT), while its peptide backbone interacts with the single-stranded DNA template (at nucleotide +1) and with the peptide backbone of Gln151. Specific DNA polymerase activities of mutant RTs bearing amino acid substitutions at position 75 (i.e., V75A, V75F, V75I, V75L, V75M, V75S and V75T) were relatively high. Primer extension experiments carried out in the absence of one deoxyribonucleoside-triphosphate suggested that mutations did not affect the accuracy of the RT, except for V75A, V75F, V75I, and to a lesser extent V75T. The fidelity of RTs bearing mutations V75F and V75I increased 1.8- and 3-fold, respectively, as measured by the M13 lacZ alpha forward mutation assay, while V75A showed 1.4-fold decreased accuracy. Steady- and pre-steady-state kinetics demonstrated that the increased fidelity of V75I and V75F was related to their decreased ability to extend mismatched template-primers, while misincorporation efficiencies were not significantly affected by mutations. The increased mispair extension fidelity of mutant V75I RT could be attributed to the nucleotide affinity loss, observed in reactions with mismatched template-primers. Altogether, these data suggest that Val75 interactions with the 5' template overhang are important determinants of fidelity.

摘要

缬氨酸75(Val75)的侧链稳定了人类免疫缺陷病毒1型逆转录酶(RT)的指状亚结构域,而其肽主链与单链DNA模板(核苷酸+1处)以及谷氨酰胺151(Gln151)的肽主链相互作用。在第75位带有氨基酸替代(即V75A、V75F、V75I、V75L、V75M、V75S和V75T)的突变RT的特异性DNA聚合酶活性相对较高。在缺少一种脱氧核糖核苷三磷酸的情况下进行的引物延伸实验表明,除了V75A、V75F、V75I以及程度较轻的V75T外,这些突变并不影响RT的准确性。通过M13 lacZα正向突变测定法测量,带有V75F和V75I突变的RT的保真度分别提高了1.8倍和3倍,而V75A的准确性则降低了1.4倍。稳态和预稳态动力学表明,V75I和V75F保真度的提高与其延伸错配模板引物的能力降低有关,而错配掺入效率并未受到突变的显著影响。突变体V75I RT错配延伸保真度的提高可归因于在与错配模板引物的反应中观察到的核苷酸亲和力丧失。总之,这些数据表明Val75与5'模板突出端的相互作用是保真度的重要决定因素。

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