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视紫质的折叠与组装

Folding and assembly of proteorhodopsin.

作者信息

Klyszejko Adriana L, Shastri Sarika, Mari Stefania A, Grubmüller Helmut, Muller Daniel J, Glaubitz Clemens

机构信息

Biotechnology Center, University of Technology Dresden, Germany.

出版信息

J Mol Biol. 2008 Feb 8;376(1):35-41. doi: 10.1016/j.jmb.2007.11.030. Epub 2007 Nov 19.

DOI:10.1016/j.jmb.2007.11.030
PMID:18155728
Abstract

Proteorhodopsins (PRs), the recently discovered light-driven proton pumps, play a major role in supplying energy for microbial organisms of oceans. In contrast to PR, rhodopsins found in Archaea and Eukarya are structurally well characterized. Using single-molecule microscopy and spectroscopy, we observed the oligomeric assembly of native PR molecules and detected their folding in the membrane. PR showed unfolding patterns identical with those of bacteriorhodopsin and halorhodopsin, indicating that PR folds similarly to archaeal rhodopsins. Surprisingly, PR predominantly assembles into hexameric oligomers, with a smaller fraction assembling into pentamers. Within these oligomers, PR arranged into radial assemblies. We suggest that this structural assembly of PR may have functional implications.

摘要

视紫质(PRs)是最近发现的光驱动质子泵,在为海洋微生物提供能量方面发挥着重要作用。与PR不同,古细菌和真核生物中发现的视紫红质在结构上有很好的特征描述。利用单分子显微镜和光谱学,我们观察了天然PR分子的寡聚组装,并检测到它们在膜中的折叠。PR显示出与细菌视紫红质和卤视紫红质相同的解折叠模式,表明PR的折叠方式与古细菌视紫红质相似。令人惊讶的是,PR主要组装成六聚体寡聚体,只有一小部分组装成五聚体。在这些寡聚体内,PR排列成放射状组装。我们认为PR的这种结构组装可能具有功能意义。

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1
Folding and assembly of proteorhodopsin.视紫质的折叠与组装
J Mol Biol. 2008 Feb 8;376(1):35-41. doi: 10.1016/j.jmb.2007.11.030. Epub 2007 Nov 19.
2
Characterizing molecular interactions in different bacteriorhodopsin assemblies by single-molecule force spectroscopy.通过单分子力谱表征不同细菌视紫红质组装体中的分子相互作用。
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Light-driven ion-translocating rhodopsins in marine bacteria.海洋细菌中的光驱动离子转运视紫红质
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Proteorhodopsin in the ubiquitous marine bacterium SAR11.普遍存在的海洋细菌SAR11中的视紫质。
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FTIR study of the retinal Schiff base and internal water molecules of proteorhodopsin.视紫红质的视网膜席夫碱和内部水分子的傅里叶变换红外光谱研究。
Biochemistry. 2007 May 8;46(18):5365-73. doi: 10.1021/bi700143g. Epub 2007 Apr 12.
7
The distinct signaling mechanisms of microbial sensory rhodopsins in Archaea, Eubacteria and Eukarya.古菌、真细菌和真核生物中微生物视紫红质的独特信号传导机制。
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pH-dependent photoisomerization of retinal in proteorhodopsin.视紫质中视黄醛的pH依赖性光异构化
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Unfolding and identification of membrane proteins in situ.原位展开和鉴定膜蛋白。
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Light and prey influence the abundances of two rhodopsins in the dinoflagellate Oxyrrhis marina.光照和猎物影响海洋膝沟藻中两种视蛋白的丰度。
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Solid-State NMR Spectroscopy on Microbial Rhodopsins.固态核磁共振波谱在微生物视紫红质中的应用。
Methods Mol Biol. 2022;2501:181-206. doi: 10.1007/978-1-0716-2329-9_9.
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Microbial Rhodopsins.微生物视紫红质
Methods Mol Biol. 2022;2501:1-52. doi: 10.1007/978-1-0716-2329-9_1.
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Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.视紫红质:一种用于研究、开发和创新工程的极具通用性的蛋白质种类。
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LILBID-MS: using lasers to shed light on biomolecular architectures.LILBID-MS:利用激光揭示生物分子结构。
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Rhodopsins build up the birefringent bodies of the dinoflagellate Oxyrrhis marina.视紫红质构成甲藻属海洋眼虫的双折射体。
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Diversity, Mechanism, and Optogenetic Application of Light-Driven Ion Pump Rhodopsins.光驱动离子泵视紫红质的多样性、机制及光遗传学应用。
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